CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTCCATATGATGTGAGGGACAGGGTTCTAGTTTCCTTCTTCCGT
ATGTGGATTTCCAGTCTTATCTGCATGTGGGGGGTTGAATAGGTGTAGGC
TCTATAGACTCTTGTGTTTGAATGCTTGGTCATAGGGAGTGGCACTATTA
GTAGGTGTGGCCTTGTTGCAGTAGGTGTGGACTTCTTGGAGAAAGTGAGT
CACTGTGGGAGTGGGTTTTGAGATCTCCTATGCTCAAGCTACATCCAGTG
ACACAGACTCTTCTGTGCATAAGAATCTAAACAAGGAACTCTCAGCTCCT
CCAGCTCCATGTCAGCCTAGATGCTGCCCTGCTTCTTACCATGATGACAA
CGGACTGAACCTCTGAACTGTAAGCCACCTACAATTAAATGTTTTCTTTT
CTAAGCATGGCAATGGTGCCCCTTAACAATGATAAAACCCAAGCTAAGAC
ACTGCCTCATCTATTAAAGAAGTTGTCTTTTTTTTTTTTAACACTGTATG
CTCTTACCCTCTTTGTTGAAAATCAGGTGTCAGTAGCTACATAGCTTTGT
TTCTTGGCCCTCTGCCCTAGCCCCATAGTAAATTAATCTGTTTTTGCGCT
TGAGACTGTGTTGACCGTGTCACTGTATCTCTATAGTATACCTAATGTCT
CCTATAGGATGCTTGAAGCACTGCTCTTTGTGTTCAGCATTGG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAGCAACAACAACAACAAGAAAAT
GTAAATCAGAAACATGTTAATACCTGACATGCTAGTAACATACCTGTAAT
TCTAGAACTTTGGAGACCGAGTCTGGAAAGTTGTCACAGGTTCAAGGCCA
ACCTGACTACATATGAGTTTCAAGTCAATTTAGGCTATTGTGGAAGAACC
TGTCTCACACAACAAATCACAGTCACTAGTTTGACTGTAGTTTGACAGAT
AAAGAGTGATAAACCCTTTCAAATGTATGTTACTCTACAGAACGATGAAT
TCTCTTTATCTGTTACATGAGTCTAATACTATATGGGCTATTTACAGGTG
AAAACAAATTTAACACGCTCAGCATCATTATAGCCAGTAGGATATATCAA
CATTTTTACAGCTTTAAAAAGTCTATATTCTTCCCTAGTCTCATCTACTA
ATCATAAAAGATGATACCCTAAGAATATTTCAATGAAAAATCTGTCTAAC
TTTTAGAATGGGCTATGTGCTCAGCTTTTGCTAACTTGGGTGTTTTATTA
AATGTGGAGTTAACTGAATCTTATCATCATGGCTATAGATGTATAGTAGC
TTACAAAACAGATATTTCTTCCCGTGTTCAACATCTTACTTTAATCTAGA
CAAGAACTCTAAATTGTCTTGGGAACACATACTCCAAAA

Query= MSMg01no233_o09.g1 MSMg01no233_o09.g1 CHROMAT_FILE:
MSMg01no233_o09.g1 PHD_FILE: MSMg01no233_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:43 2005
         (662 letters)



>mm_chr12_34730969_34732034
          Length = 1066

 Score = 1100 bits (569), Expect = 0.0
 Identities = 624/667 (93%), Gaps = 40/667 (5%)
 Strand = Plus / Minus

                                                                        
Query: 1    atagcaacaacaacaacaagaaaatgtaaatcagaaacatgttaatacctgacatgctag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 atagcaacaacaacaacaagaaaatgtaaatcagaaacatgttaatacctgacatgctag 964

                                                                        
Query: 61   taacatacctgtaattctagaactttggagaccgagtctggaaagttgtcacaggttcaa 120
            ||||||||||||||||                                  ||||||||||
Sbjct: 963  taacatacctgtaatt----------------------------------acaggttcaa 938

                                                                        
Query: 121  ggccaacctgactacatatgagtttcaagtcaatttaggctattgtggaagaacctgtct 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 937  ggccaacctgactacatatgagtttcaagtcaatttaggctattgtggaagaacccgtct 878

                                                                        
Query: 181  cacacaacaaatcacagtcactagtttgactgtagtttgac-----agataaagagtgat 235
            |||||||||||||||||||||||||||||||||||||||||     |||||||||| |||
Sbjct: 877  cacacaacaaatcacagtcactagtttgactgtagtttgactgtcaagataaagagcgat 818

                                                                        
Query: 236  aaaccctttcaaatgtatgttactctacagaacgatgaattctctttatctgttacatga 295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817  aaaccctttcaaatgtatgttactctacagaacgatgaattctctttatctgttacatga 758

                                                                        
Query: 296  gtctaatactatatgggctatttacaggtgaaaacaaatttaacacgctcagcatcatta 355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757  gtctaatactatatgggctatttacaggtgaaaacaaatttaacacgctcagcatcatta 698

                                                                        
Query: 356  tagccagtaggatatatcaacatttttacagctttaaaaagtctatattcttccctagtc 415
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697  taaccagtaggatatatcaacatttttacagctttaaaaagtctatattcttccctagtc 638

                                                                        
Query: 416  tcatctactaatcataaaagatgataccctaagaatatttcaatgaaaaatctgtctaac 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637  tcatctactaatcataaaagatgataccctaagaatatttcaatgaaaaatctgtctaac 578

                                                                        
Query: 476  ttttagaatgggctatgtgctcagcttttgctaacttgggtgttttattaaatgtggagt 535
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 577  ttttagaatgggctatgtgctcagcttttgctaactt-ggtgttttattaaatgtggagt 519

                                                                        
Query: 536  taactgaatcttatcatcatggctatagatgtatagtagcttacaaaacagatatttctt 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518  taactgaatcttatcatcatggctatagatgtatagtagcttacaaaacagatatttctt 459

                                                                        
Query: 596  cccgtgttcaacatcttactttaatctagacaagaactctaaattgtcttgggaacacat 655
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458  cccgtgttcaacatcttactttaatctagacaagaactctaaattgtcttgggaacacat 399

                   
Query: 656  actccaa 662
            |||||||
Sbjct: 398  actccaa 392


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1066
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1056
Effective search space:   688512
Effective search space used:   688512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)