BAC Information

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BAC

Clone NameMSMg01-233P12
Chromosome12 (Build37)
Map Location 83,243,638 - 83,243,914
singlet/doubletsinglet
Overlap genenone
Upstream geneSmoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
Downstream geneSipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233P12.T7 (MSMg01no233_p12.b1)MSMg01-233P12.TJ (MSMg01no233_p12.g1)
ACCAG400003AG400004
length777736
length of high quality
(start - end)
39 (73 - 111)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no233_p12.b1 PHD_FILE: MSMg01no233_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:48 2005CHROMAT_FILE: MSMg01no233_p12.g1 PHD_FILE: MSMg01no233_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTGAAATTCTTATATTTGTTTGGATTTTTTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTTTTTACCCCACAAAACAACAAATCCTACAAAACCAT
AACCCAAATTCTTCATTATAAACTTTCTCCATCCCCACCCACCCCCAAAC
AAAATACCATCCATCATATATACATACTCTAACATAAAATTAAAAATAAC
CTACACTCATTCACCTTATTGCGACATTAAACACATCCTCTTTATACAAC
GTGAAAAGTCTAAAAAACTATTTTTTTTAAAACAGAATCCATAATATAAA
TACAGAACCACCTTTTTTTTTTTTCCTCCCCCCCCCCCCCCCCCCATAAC
GTAAATTAACCAGACCCAGCCCGGGCCGAATTTGTTCCCCCAAAAAGAAA
AAACAAATACTTCTACCCAGCGGGAAAAAAAAAAATTCTTTTTCCTGCAT
CACAATTTTGAAAAATCCATCTAACCAAATCCCCCATATAAATATTTACT
TCCCAAACCTCATTTCCCCCCATATTTCCTAACCCCCCCTTATTATCAAA
ATTTCGTATTAACCTATATATATTTTATAAGAACACCCATTCCCTTACTG
ATACAAACCTCATATCACCAGACCAATCATCGCGATCGGATCGGTGAATT
CATTATTAAACCCCCTTCCCTGCTCTACTTAATCACCCCCCACTTCAACC
ACAAATCACTGCACCACAAACCAGAAN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTAATAACAAATCCAAGGTGAT
GGTGCAGCTTTAGTCGGGGACCACCTTTGAGAACCACTAAGAGTCAAGAC
AAGAGTTTCTCAGGACAGGAGGGCATTATAATAGGGCCAGGATGCATGCC
GGGAGCTCTGGACTGCATGGCCAGATACTACTTCTTGATTTTGATATAGG
TTATAAGAAGGTTATCCCCATAATAATTCATTAAAATCTACATTTGTTTA
TGTGTTTTTATTTGGTACTGCTTCTATTTTAAAATACTAATCAAAAATTA
AAATTTAGGTTTGTTTAGAAACCGCCCGCCTCCGCATTTAAGAGCAATTG
CTGTTGTAGATGATCTCTGTCCAATTCTCGACACCCACATGGCAGCTCAC
AACTGTATCTCTAGTTCTGTGGAATCCAACGCCCTCTTATGACCTGGACA
GGTACCAGATAGATGCATGATGCACATTAATCCACACAATTAAACATAAG
ACAAAAATACATACATTTAAAAAAAAATAAAAGTCTGTAGGATTAAACAA
ATAATTGCTATTTATTATTATAATTATTTATAGTATTGTAAATTAAACCC
CAGCTAGCCTAGAGCTCTACCACTGAGCTACACCCCCAGGATCAGAGTTT
CTGCTTTAGAGTTCAGTTGAGGGAATGTCTTCTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_p12.g1 MSMg01no233_p12.g1 CHROMAT_FILE:
MSMg01no233_p12.g1 PHD_FILE: MSMg01no233_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:48 2005
         (285 letters)



>mm_chr12_83243375_83244059
          Length = 685

 Score =  476 bits (246), Expect = e-139
 Identities = 270/278 (97%), Gaps = 2/278 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   taacaaatccaaggtgatggtgcagctttagtcggggaccacctttgagaaccactaaga 67
           ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 540 taacaaatccaaggtgatggtgcagctttagtcagggaccacttttgagaaccactaaga 481

                                                                       
Query: 68  gtcaagacaag-agtttctcaggacaggagggcattataatagggccaggatgcatgccg 126
           |||||||  || ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtcaaga-tagtagtttcttaggacaggagggcattataatagggccaggatgcatgccg 422

                                                                       
Query: 127 ggagctctggactgcatggccagatactacttcttgattttgatataggttataagaagg 186
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 421 ggagctctggactgcatggccagatagtacttcttgattttgatataggttataagaagg 362

                                                                       
Query: 187 ttatccccataataattcattaaaatctacatttgtttatgtgtttttatttggtactgc 246
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttatccccataataattaattaaaatctacatttgtttatgtgtttttatttggtactgc 302

                                                 
Query: 247 ttctattttaaaatactaatcaaaaattaaaatttagg 284
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttctattttaaaatactaatcaaaaattaaaatttagg 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)