Query= MSMg01no235_i01.b1 MSMg01no235_i01.b1 CHROMAT_FILE:
MSMg01no235_i01.b1 PHD_FILE: MSMg01no235_i01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:51 2005
(693 letters)
>mm_chr12_31968412_31969504
Length = 1093
Score = 1239 bits (641), Expect = 0.0
Identities = 663/673 (98%), Gaps = 5/673 (0%)
Strand = Plus / Minus
Query: 4 ggaattctcagaaagatgtactgattagaaacacatccctccctccaggctgttaaaaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 ggaattctcagaaagatgtactgattagaaacacatccctccctccaggctgttaaaaag 612
Query: 64 ccaacttgtttacccctgaagactttcagctggaggaaaggggtgggcagaggttttaga 123
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ccaacttgtttacccatgaagactttcagctggaggaaaggggtgggcagaggttttaga 552
Query: 124 agggcagagtgtttggatcttgcacccttttggacaaagactaacaagtcttgaagagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 agggcagagtgtttggatcttgcacccttttggacaaagactaacaagtcttgaagagac 492
Query: 184 agatagcaaataagcaaggtatacttgtcacccagagaggctctgagactatggggaggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 agatagcaaataagcaaggtatacttgtcacccagagaggctctgagactatggggaggt 432
Query: 244 gcttgaggcagaggtagggactgggtttcaatgcccaccactagttactcatttactaac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gcttgaggcagaggtagggactgggtttcaatgcccaccactagttactcatttactaac 372
Query: 304 cactaacttttaggtctctttcaaggttggcagagtcctgtgagctccagaattctgtct 363
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 cactaacttttaggtctttttcaaggttggcagagtcctgtgagctccagaattctgtct 312
Query: 364 ggtattaaattcctaagggttcgaggaattttcctggcagccacttaagtagattagagt 423
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 311 ggtattaaattcctaagggttcgaggaatttttctggcagccacttaagtagattagagt 252
Query: 424 ataatacccttgcttctctaattgctatagctcacgtctctgttgttctgaccaaaacca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ataatacccttgcttctctaattgctatagctcacgtctctgttgttctgaccaaaacca 192
Query: 484 acttgggaaaaggaaagggtttatctggcttacatttccaagtcacagtctatcaccaag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 acttgggaaaaggaaagggtttatctggcttacatttccaagtcacagtctatcaccaag 132
Query: 544 ggatgtcaggtcaggaactcaagcagagttcatgaaggaatgctgcttgagtctcgcggc 603
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ggatgtcaggtcaggagctcaagcagagttcatgaaggaatgctgcttgagtctcgcggc 72
Query: 604 tcattccattcagcttgccttcttcagatcacctgcccacaggtggcacctcccacagtg 663
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 71 t-----cattcagcttgccttctttagatcacctgcccacaggtggcacctcccacagtg 17
Query: 664 agctaggccctcc 676
|||||||||||||
Sbjct: 16 agctaggccctcc 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no235_i01.g1 MSMg01no235_i01.g1 CHROMAT_FILE:
MSMg01no235_i01.g1 PHD_FILE: MSMg01no235_i01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:52:51 2005
(168 letters)
>mm_chr12_31946561_31947128
Length = 568
Score = 310 bits (160), Expect = 4e-89
Identities = 163/164 (99%)
Strand = Plus / Plus
Query: 1 aaggatgtttttacaacagagactagtcttaactttgattcaaaccctgcttactgagta 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 aaggatgtttttacaacagagactagtcttaactttgattcaaaccctgcttactgagca 260
Query: 61 cctctctggtggacctggtggtgtgctggccagtgtctgggtgggtgggggaaaatgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctctctggtggacctggtggtgtgctggccagtgtctgggtgggtgggggaaaatgtgg 320
Query: 121 tgcttgtccttgcttcattgtctcctgggagagataagcgcata 164
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcttgtccttgcttcattgtctcctgggagagataagcgcata 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space: 89600
Effective search space used: 89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
