BAC Information

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BAC

Clone NameMSMg01-237G02
Chromosome12 (Build37)
Map Location 30,061,261 - 30,226,801
singlet/doubletdoublet
Overlap geneMyt1l, LOC100043496
Upstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608
Downstream genePxdn, Tpo, Sntg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237G02.T7 (MSMg01no237_g02.b1)MSMg01-237G02.TJ (MSMg01no237_g02.g1)
ACCAG402345AG402346
length794796
length of high quality
(start - end)
377 (126 - 502)508 (134 - 641)
definitionCHROMAT_FILE: MSMg01no237_g02.b1 PHD_FILE: MSMg01no237_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:12 2005CHROMAT_FILE: MSMg01no237_g02.g1 PHD_FILE: MSMg01no237_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,061,261 - 30,061,637)(30,226,342 - 30,226,801)
sequence
TCCCCCCCTCCGGNGGATTTANATCCTCCCTATTTTATTTTTAATCNNNC
CTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAAGAGGATCCG
CGGAATTCTCACTTTCCCCCTTGAACGCTCTTCTCTCGTGACACGTGGTG
GCATGGTTTCATATCCATTGTCTCCCTTTGGTCTCTAAGTATTATCAGAA
CAGAAACTGTGTCTCAGGGATGTGCTGTGGCCAGCAACATCATCAGTGAT
GATGTCTAGCATGATAGGAACATGTCTATGCTGCCTACCCAAATGAAGAA
TACATGAGCAGACTTCAAGGCCTCTGATACCATCAACAGCGAACCAGCAA
CATCGAACATTATCTTCTGTTCCTCTTTCTACCTGCAACAATTCCTGATC
TGTGTAAGTCACATTTCCCTCATCTGAGGCCACAGTATATGTGGAACGAA
ATGTAATTTTCTCCCCCTACCATTTTGTTCCATTGTTATTATATCCATGG
TCACGTGGTAGGAAGAATTGTCTGGTCTTCCAGTTAGAACTAGTCATCCC
TGCCCTTGTTTCAAGGTTTGGGGAGTCTCTTTACATCTACTGCATAGCTG
ACTAATGTCTGGGTGTGTTCTACTCACTCAGCAATCGGTACATATAATTT
ACAGGGCTCATTGATTATTTCCTCTGAGTCCTACTCCCATTGACTCTCTC
TTTATTCTGTTTTTTCACTATTAATGAGGCTCCCAAAATTCAGCTCTATT
CGATACATTTTCTTGTGTTTTCTCTCCTTCATGATATCTTTGTC
GCCTCCCGCCCCGTCCCCCCCTCCCCTTATATTATTTTCTTTTTCCCCCN
NCCCCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAAGAAAAAAATTT
AAATACACTTACACTCCAAGTCCTGCCTGCCCTTTGATAAATGGGCAGAA
GTAGGCAGGACTACATGTAGAAGGAAAAAAAAATCCAGGTGATGTCAGTA
TGTGGTCCCAGCTGCACATTCCCTAGTTATAAGAGGAAGTGAAAGATAAT
CCCACACTAGAGATAGACAGAGCTCTGGAAGGTGGCAAGGATATTATTGT
TTGCTTCTTTTACTAGAGACCTATTAAAAAGAAGTACACTTTAATTAAAG
TGTAATTTTATCACTTTTCTTTTTTCTTTCCTTCCTGCAGCCCCTAAATG
CACCCCTTGCTTTTAAAGTCATAGCCTCTTTTTTCCATTGCTTATACTAT
TGCCACATACATAAATTAATACATGACTATTGTCACATATAAATAAATCC
ATCCTTCTGAGTTAGTTTTTGTTCCTTGTGTGTATATGGTTTCAGGGATG
ACTAGTCTGCACTGGACAACCAATAAGGAGGCTCATCTCTGGGACAGGCT
AATTCTTCCTCTCCAAGCAACTATTGGCTGCCCATGCTTCTTTGTCTGGA
GATGAGAACTTACAGCATGCTTCCTTTCGGGCTATCATATCTATTGATAC
TGGCATATTCTGGAGTTTATGGACCAAGCATCCTTCATGCTAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_g02.b1 MSMg01no237_g02.b1 CHROMAT_FILE:
MSMg01no237_g02.b1 PHD_FILE: MSMg01no237_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:12 2005
         (377 letters)



>mm_chr12_30061061_30061837
          Length = 777

 Score =  690 bits (357), Expect = 0.0
 Identities = 372/377 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgctcttctctcgtgacacgtggtggcatggtttcatatccattgtctccctttggtctc 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 201 cgctcttctctcgtgacacgtggtggcatggtttcatatccattgtttgcctttggtctc 260

                                                                       
Query: 61  taagtattatcagaacagaaactgtgtctcagggatgtgctgtggccagcaacatcatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtattatcagaacagaaactgtgtctcagggatgtgctgtggccagcaacatcatca 320

                                                                       
Query: 121 gtgatgatgtctagcatgataggaacatgtctatgctgcctacccaaatgaagaatacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgatgatgtctagcatgataggaacatgtctatgctgcctacccaaatgaagaatacat 380

                                                                       
Query: 181 gagcagacttcaaggcctctgataccatcaacagcgaaccagcaacatcgaacattatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcagacttcaaggcctctgataccatcaacagcgaaccagcaacatcgaacattatct 440

                                                                       
Query: 241 tctgttcctctttctacctgcaacaattcctgatctgtgtaagtcacatttccctcatct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctgttcctctttctacctgcaacaattcctgatctgtgtaagtcacatttccctcatct 500

                                                                       
Query: 301 gaggccacagtatatgtggaacgaaatgtaattttctccccctaccattttgttccattg 360
           |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 501 gaggccacagtatatgtggaacgaaatgtaattttctccttctaccattttgttccattg 560

                            
Query: 361 ttattatatccatggtc 377
           ||| |||||||||||||
Sbjct: 561 ttactatatccatggtc 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no237_g02.g1 MSMg01no237_g02.g1 CHROMAT_FILE:
MSMg01no237_g02.g1 PHD_FILE: MSMg01no237_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:12 2005
         (508 letters)



>mm_chr12_30226342_30227249
          Length = 908

 Score =  835 bits (432), Expect = 0.0
 Identities = 453/460 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actaaagaaaaaaatttaaatacacttacactccaagtcctgcctgccctttgataaatg 60
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 460 actaaagaaaaaaatttaaatacacttacactccaagtcctgcctgtcttttgataaatg 401

                                                                       
Query: 61  ggcagaagtaggcaggactacatgtagaaggaaaaaaaaatccaggtgatgtcagtatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggcagaagtaggcaggactacatgtagaaggaaaaaaaaatccaggtgatgtcagtatgt 341

                                                                       
Query: 121 ggtcccagctgcacattccctagttataagaggaagtgaaagataatcccacactagaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ggtcccagctgcacattccctagttataagaggaagtgaaagataatcccacactagaga 281

                                                                       
Query: 181 tagacagagctctggaaggtggcaaggatattattgtttgcttcttttactagagaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tagacagagctctggaaggtggcaaggatattattgtttgcttcttttactagagaccta 221

                                                                       
Query: 241 ttaaaaagaagtacactttaattaaagtgtaattttatcacttttcttttttctttcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||
Sbjct: 220 ttaaaaagaagtacactttaattaaagtgtaattttatcacttttcccttctctttcctt 161

                                                                       
Query: 301 cctgcagcccctaaatgcaccccttgcttttaaagtcatagcctcttttttccattgctt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 160 cctgcagcccctaaatgcaccccttgcttttaaagtcatagcttcttttttcctttgctt 101

                                                                       
Query: 361 atactattgccacatacataaattaatacatgactattgtcacatataaataaatccatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 atactattgccacatacataaattaatacatgactattgtcacatataaataaatccatc 41

                                                   
Query: 421 cttctgagttagtttttgttccttgtgtgtatatggtttc 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  cttctgagttagtttttgttccttgtgtgtatatggtttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)