BAC Information

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BAC

Clone NameMSMg01-260D09
Chromosome12 (Build37)
Map Location 84,977,036 - 84,977,653
singlet/doubletsinglet
Overlap genenone
Upstream geneRgs6, Dpf3, Wdr21, Zfyve1, LOC626950
Downstream geneRbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260D09.T7 (MSMg01no260_d09.b1)MSMg01-260D09.TJ (MSMg01no260_d09.g1)
ACCAG402937AG402938
length735762
length of high quality
(start - end)
343 (48 - 390)665 (73 - 737)
definitionCHROMAT_FILE: MSMg01no260_d09.b1 PHD_FILE: MSMg01no260_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:15 2005CHROMAT_FILE: MSMg01no260_d09.g1 PHD_FILE: MSMg01no260_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTGAGATCGCCCTGCCTCTGCCTCCTGAATACAAGAACTAAA
GGTGTGTGCCACCACGCCTGGCGCCATCTATTATTTTTTATTTATTTATT
TATTATATGTAAGTACAGTGTAGCTGTCTTCAGACACTCCAGAAGAGGGC
ATCAGATCTTGTTACGGATGGTTGTGAGCCACCATGTGGTTGATGGGATT
TGAACTCAGGACCTTTGGAAGGTCAGTCGGTGCTCTTAACCGCTGAGCCA
TCTCTCCAGCCCGCCATCTATTATTTTAAGAATAAAAAGCTCTGGACTGT
ACGTGACACTAGAGTGGGCGGGATGATGAACCTCAAGCTACAACTCCAAG
TGAACCCCAGGAAGCACGCCCGAGCCACCTGGCCACCACCTCATACCTTC
AGAGCAAGTTCAAGAGCAGAAGGACCTCTCCTTCCTCACGCAACGCACAA
TTTCTTCTTCTCTTTTCTGCTCTTCTGCTCTTATCTTCACTTTCTTCCTT
TCTTCTTAATGACAAGCTCCTACGCTCTGTCATCTATTAGTCTAGTGAAA
TTTGATCCTTTCTAAGGCTAAGTCTATGATCCATGTCTTCATAGGATCCA
CCACTGAAGTGGACCTTCTCTGGAACCCATCCTCCCATCCTGTTGACAGG
TCTTTGTGGCAGTGTATCATGTTCACATTACCTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACAGACAACTGGATTCTCCAGGAACCAT
TCCTTTAAAAAAGGTTCTGTTGCCAAATAATGAAAATGTTAAAAAGAAAC
TTATTTTAAGCAGAACTTTTCAACAGGTTGGGGACATGGCTCAGGCATAG
AGCTCTTGTCTTCCAGCACAGTCATGGCCTGTCACTGACACTGCACAGAA
GCACTGGATGACAAGAGGCAAGGATTGGAATGCTGAAGTGTTTTGAATCT
CCAAAACATAAGATCTTTTCCTGAGAAACTCTCACTTTCAATGAGAAAAA
AGCAGCACCTATACAGACACATTGGTGATCACTACAACCTAAGGCAGAAT
ATACATAGTGCTTCACAAACAGGCTAGAGGGGTACTTCTGGGTAAGTTAC
ACAACTCTATATTTACTTTAAAAAATTCACTGAGCTTTCTAAAGCTACTA
TTTTTAAAAGACTTCAATTCAGGACAACTACCAAAATCTAAGGCCTGAGG
AAAATTAAGCAGTACTGTACCAATGCTAATTTCCTGACTGTGATCACTGT
ACTATTTTTAAATGATAAAAAAGGAATTTCCCAGAGCTTTAAGGAAATAC
ACCACAGTATTTGTGGGTATAGTGGCAACACATCTGAAATTTAGTAGCAA
AACATGTCAAAAGAAAACTACTGAAAGGAGAAAAGAACAAAAGTAACCTG
GCAAACACACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_d09.g1 MSMg01no260_d09.g1 CHROMAT_FILE:
MSMg01no260_d09.g1 PHD_FILE: MSMg01no260_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:15 2005
         (665 letters)



>mm_chr12_84977036_84978094
          Length = 1059

 Score = 1122 bits (580), Expect = 0.0
 Identities = 611/624 (97%), Gaps = 6/624 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagacaactggattctccaggaaccattcctttaaaaaaggttctgttgccaaataatg 60
           ||||||||||||||||||||||||||||| ||     |||||||||||||||||||||||
Sbjct: 618 acagacaactggattctccaggaaccatt-ct-----aaaggttctgttgccaaataatg 565

                                                                       
Query: 61  aaaatgttaaaaagaaacttattttaagcagaacttttcaacaggttggggacatggctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaatgttaaaaagaaacttattttaagcagaacttttcaacaggttggggacatggctc 505

                                                                       
Query: 121 aggcatagagctcttgtcttccagcacagtcatggcctgtcactgacactgcacagaagc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 aggcatagagctcttgtcttccagcacagtcatggcctgtcactgacactgcacagcagc 445

                                                                       
Query: 181 actggatgacaagaggcaaggattggaatgctgaagtgttttgaatctccaaaacataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 actggatgacaagaggcaaggattggaatgctgaagtgttttgaatctccaaaacataag 385

                                                                       
Query: 241 atcttttcctgagaaactctcactttcaatgagaaaaaagcagcacctatacagacacat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 384 atcttttcctgagaaactctcactttcaatgagaaaaaagcagcacctatccagacacat 325

                                                                       
Query: 301 tggtgatcactacaacctaaggcagaatatacatagtgcttcacaaacaggctagagggg 360
           |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 324 tggtgatcgctacaacctaaggcagaatatacatagtgcttcacaaataggctagagggg 265

                                                                       
Query: 361 tacttctgggtaagttacacaactctatatttactttaaaaaattcactgagctttctaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacttctgggtaagttacacaactctatatttactttaaaaaattcactgagctttctaa 205

                                                                       
Query: 421 agctactatttttaaaagacttcaattcaggacaactaccaaaatctaaggcctgaggaa 480
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agctactattttaaaaatacttcaattcaggacaactaccaaaatctaaggcctgaggaa 145

                                                                       
Query: 481 aattaagcagtactgtaccaatgctaatttcctgactgtgatcactgtactatttttaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 aattaagcagtactgtaccaatgctaatttcctgactgtgatcactgtactatttttaaa 85

                                                                       
Query: 541 tgataaaaaaggaatttcccagagctttaaggaaatacaccacagtatttgtgggtatag 600
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 84  tgataaaaaaggaatttcccagagctttcaggaaatacaccacagtatttgtgggtatag 25

                                   
Query: 601 tggcaacacatctgaaatttagta 624
           ||||||||||||||||||||||||
Sbjct: 24  tggcaacacatctgaaatttagta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1059
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1049
Effective search space:   687095
Effective search space used:   687095
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)