BAC Information

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BAC

Clone NameMSMg01-260F05
Chromosome12 (Build37)
Map Location 30,500,324 - 30,500,861
singlet/doubletsinglet
Overlap geneMyt1l
Upstream geneTssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F05.T7 (MSMg01no260_f05.b1)MSMg01-260F05.TJ (MSMg01no260_f05.g1)
ACCAG403022AG403023
length860749
length of high quality
(start - end)
279 (49 - 327)538 (73 - 610)
definitionCHROMAT_FILE: MSMg01no260_f05.b1 PHD_FILE: MSMg01no260_f05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:23 2005CHROMAT_FILE: MSMg01no260_f05.g1 PHD_FILE: MSMg01no260_f05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCCTGTTGCTTATCACTGAAGCCTCTGATCTGGGTTTAGG
GAGTTAAAAATATTATACTATATATAAATATAAATGTGTGTATCTATGGA
TGCATTTGTGATCTAGATCAGAGGACAACTTGTGGAAGTCAGTTCTCTCC
TTCCACCATGCAGTTCCCAAGGATCGAAGATGAAGCTCAGGTTGTCAGCC
TCAGAGGCAGGCACCTTTCTCCTAAATCATCTCACTAACCCTTGAAGAAT
CTTTATTATGTGGATATAGATGGTGGTTTGTTTTTTTTCTCTCCGTTCCT
TCTTTCTTTTCTCCCCCCTTTTTTTTTCCCCCCCTTCCCTCCTCTACTTT
TTATTCACTTTACTTTTTTTATTCCCCCCCCCCCCTCTTTATATATCAAA
ATTTATACTTATTTTTTCTTCCTTCCTTTTTTTTCTCTTTAACCTTTTCC
TCTCCCCTTTTTTTTCTTCTCCTTTTCTTTTTCCTTCCTCTTTACTCACT
TTACTATTTCTCTCCCCTCTTCTTTTTGCCTCATTTTTCCCCTTTTATTT
CTTCCTTCTCCTTTGCTCCCGTTCTCCCTTTCTTTTTTTTCCCCTTCTCC
GTACCTCTCTCTTTTTTTTTTATCCCCCTCCCCTTTCTCCCCATTTTTCC
TCTCTACTCTCTCTCTTCTACACTTTTTCTTTTCTTCTCCTCTTCTCAAC
TTTTTTATTTTTCCCATTCCCTATTCTTTATCTATTCTCTCGACTATCTT
TCCCCTTTCCCCCCCTCTTCCCTTCTCCCTATCCCCTCATTTTATCTCTC
CTTATTTTCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCAGGAAGAACTAGGCAGTGCGTGGTCT
AGACTGAACAAGACAAAGTGACTATCCTCCTTATCTCACACTGTTTCTTT
AAATGCTCTGCTGCTGCTGCTGCTGAACACATGTCGGGGTCCCCATGTGG
CATTTGCCTCTGGCATCTCATGACTACCTTGAACACTGAGCACTGCAAGC
CTGTGCCCACAATCATTGGGTGAATCAATGTAGATGCCCCTCCTGTTAAG
GTGCCTGGCCTTCTATATTCCACATCAGTTAGCAACCATGAGTGTGGTCT
CCTTGCAAGCTCATTTGGAGGAGTGGATTGCTTTGAATGTCAATATTAAG
AGCTTTCTCTACTATGCTAGACATGTGTTCAAGGCCAGACAGAATGAAAA
CATGTGGTATGGAGGCAGAGTGGGAGGGGCTGCTTTCATTAGAGCAATAC
AACCTTCACTGCTGTCCCTGAATAGCAGGGGGACTGGCGGTCCTGACCTG
CAGATTCTTCCCTGGGACCCTGTTCTCACAGTCCTCGCTAGAAAGCAATG
AGGTCTCGTCTATGAGACCATCTTTCTTGGAGTGATCTCACTCTTTAGTA
ACTCAGTCTCAAAGACCATGCTATGTGAATTCCTCCCAACAGAAGCATCT
CTCTAATTGTAAGATTTTCTGGGGTGGGGTTCTTATTTTCTTTCCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f05.g1 MSMg01no260_f05.g1 CHROMAT_FILE:
MSMg01no260_f05.g1 PHD_FILE: MSMg01no260_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:23 2005
         (538 letters)



>mm_chr12_30500124_30501061
          Length = 938

 Score = 1040 bits (538), Expect = 0.0
 Identities = 538/538 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggaagaactaggcagtgcgtggtctagactgaacaagacaaagtgactatcctcctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggaagaactaggcagtgcgtggtctagactgaacaagacaaagtgactatcctcctt 260

                                                                       
Query: 61  atctcacactgtttctttaaatgctctgctgctgctgctgctgaacacatgtcggggtcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctcacactgtttctttaaatgctctgctgctgctgctgctgaacacatgtcggggtcc 320

                                                                       
Query: 121 ccatgtggcatttgcctctggcatctcatgactaccttgaacactgagcactgcaagcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatgtggcatttgcctctggcatctcatgactaccttgaacactgagcactgcaagcct 380

                                                                       
Query: 181 gtgcccacaatcattgggtgaatcaatgtagatgcccctcctgttaaggtgcctggcctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcccacaatcattgggtgaatcaatgtagatgcccctcctgttaaggtgcctggcctt 440

                                                                       
Query: 241 ctatattccacatcagttagcaaccatgagtgtggtctccttgcaagctcatttggagga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatattccacatcagttagcaaccatgagtgtggtctccttgcaagctcatttggagga 500

                                                                       
Query: 301 gtggattgctttgaatgtcaatattaagagctttctctactatgctagacatgtgttcaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtggattgctttgaatgtcaatattaagagctttctctactatgctagacatgtgttcaa 560

                                                                       
Query: 361 ggccagacagaatgaaaacatgtggtatggaggcagagtgggaggggctgctttcattag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggccagacagaatgaaaacatgtggtatggaggcagagtgggaggggctgctttcattag 620

                                                                       
Query: 421 agcaatacaaccttcactgctgtccctgaatagcagggggactggcggtcctgacctgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcaatacaaccttcactgctgtccctgaatagcagggggactggcggtcctgacctgca 680

                                                                     
Query: 481 gattcttccctgggaccctgttctcacagtcctcgctagaaagcaatgaggtctcgtc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattcttccctgggaccctgttctcacagtcctcgctagaaagcaatgaggtctcgtc 738


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)