Query= MSMg01no263_p14.b1 MSMg01no263_p14.b1 CHROMAT_FILE:
MSMg01no263_p14.b1 PHD_FILE: MSMg01no263_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:02 2005
(215 letters)
>mm_chr12_31521341_31521954
Length = 614
Score = 387 bits (200), Expect = e-112
Identities = 209/212 (98%), Gaps = 1/212 (0%)
Strand = Plus / Minus
Query: 4 ggaattcactcacattactcgcataaaccaaccatggcattgcctatactctcaagctca 63
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ggaattcactcacattagt-gcataaaccaaccatggcattgcctatactctcaagctca 356
Query: 64 ggagatggaggaagaaaaatcaggccttggccacaggaataaacatgactatttgaggac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ggagatggaggaagaaaaatcaggccttggccacaggaataaacatgactatttgaggac 296
Query: 124 cctccacagtcactggtgtgttgagggtaagtatttttatttttttgaaaatgtacatat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 cctccacagtcactggtgtgttgagggtaagtatttttatttttttgaaaatgtacatat 236
Query: 184 tacacccatatgtgtttgaattttgttatttg 215
|||||||| |||||||||||||||||||||||
Sbjct: 235 tacacccaaatgtgtttgaattttgttatttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 614
Length adjustment: 9
Effective length of query: 206
Effective length of database: 605
Effective search space: 124630
Effective search space used: 124630
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no263_p14.g1 MSMg01no263_p14.g1 CHROMAT_FILE:
MSMg01no263_p14.g1 PHD_FILE: MSMg01no263_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:02 2005
(469 letters)
>mm_chr12_31338086_31338955
Length = 870
Score = 847 bits (438), Expect = 0.0
Identities = 462/470 (98%), Gaps = 1/470 (0%)
Strand = Plus / Plus
Query: 1 actcagattatgcaaataatgtctgagttttaactataaaattatgcactttaattaaaa 60
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 actcagatcatgcaaataatgtctgagttttaactataaaactatgcactttaattaaaa 260
Query: 61 taggtaaaatatgtgaatacatacttcaaaa-gagaaaatatttaagtgaccaataaaca 119
||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct: 261 taggtaaaatatgtgaataaatacgtcaaaaggagaaaatatttaagtgaccaataaaca 320
Query: 120 cgctaaaaattttcaacattgataggtatagaatgcagtctgagatgcgatattcacatg 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactaaaaattttcaacattgataggtatagaatgcagtctgagatgcgatattcacatg 380
Query: 180 aaccatgctcacacagtacttgtatcaaaataaaaattatgaatgaattccagaaataac 239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 aaccatgctcacacagtacttgtatcaaaataaaaattatgaatgaatcccagaaataac 440
Query: 240 ccaatataacatttagatacttacaaaagaggagatgcaatgatctctaagtacataaaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatataacatttagatacttacaaaagaggagatgcaatgatctctaagtacataaaa 500
Query: 300 atgttcacagtgaattgatgattgaggataaagaaatcctagtcacagtaaagacagctt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgttcacagtgaattgatgattgaggataaagaaatcctagtcacagtaaagacagctt 560
Query: 360 cattctgtattcttggtaagatttaattttaaacgtcttataattagtttgagtttcatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cattctgtattcttggtaagatttaattttaaacgtcttataattagtttgagtttcatc 620
Query: 420 gtgagtcagtatgtcaaatggtggaggggaagaagaggaagaaaggagag 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgagtcagtatgtcaaatggtggaggggaagaagaggaagaaaggagag 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space: 394740
Effective search space used: 394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
