BAC Information

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BAC

Clone NameMSMg01-264I19
Chromosome12 (Build37)
Map Location 111,288,513 - 111,288,795
singlet/doubletsinglet
Overlap geneLOC100040746
Upstream geneBM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik, B830012L14Rik, LOC100040715, LOC100040724, LOC675987, LOC100041509
Downstream gene3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264I19.T7 (MSMg01no264_i19.b1)MSMg01-264I19.TJ (MSMg01no264_i19.g1)
ACCAG406065AG406066
length704810
length of high quality
(start - end)
232 (126 - 357)285 (130 - 414)
definitionCHROMAT_FILE: MSMg01no264_i19.b1 PHD_FILE: MSMg01no264_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:46 2005CHROMAT_FILE: MSMg01no264_i19.g1 PHD_FILE: MSMg01no264_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGATTATTCCCTTTTTAGGTAGGTGGGTAGCCCCATCCCTCAAC
CGGGGGCCATGCCTATTCACCCCATATGGTCTCTANAGGTTCAATCTCCC
CTTTGTTGGGAATTTCAGCTAATGTTCCCCCTGTTGGGTCCTGGGAATCT
TTTGGGTCCCTGGCATCTGGGACTTTCTAGTGGCTACCCCCAGTTCTCCT
TCCCCCACTGCTACACACCTACTTTCAAACTCCCTACCTTCTATACTTCT
CCCCCATCTCTTTTCATTCTTTAACTGACTGCCTTTCCCTCCAGATCCTC
TTTTTCNCTAGATCCCTCCCCCCCCCCCCTTATTTTCTTGNNTNTTGTGA
GTAGGANTGTNACACAAACNCATTGGAAAGATCTTCTTTCGTCTTGGGTT
TCATATGGTCTGTGAGTTGTATCATGGGTAATCCAAGCTTCTTTTTATTC
ACTTATCAGTGAGTGCATACCATGTGTGTTCTTTTGTGTCTGGGTTACCT
CACTCAGGATGATATTTTTAAGTTTCATCCATTTGCCTGTGAATTTCATG
AAGTCATTGTTTTTAATAGCTGAGTAGTACTCTATTTGTGTTTTATACCA
CATTTTCTGTATCCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCAGC
TTCA
TTTTAATTTTTTNNTGCCATACNACTAACTAAAAANCCTTATTTNNNCCC
ACACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTGAGAGAGGAAAAAAGTC
AAAAGCTTATAAACAAAGATGTTGATGCCGCTGGGGCCTTTCTTTATAAC
TGAATAAGCGGTCTTAATTCAATAAAGTGCAATCACAAAAGGCTTAGATT
GGAAGTCTCTTGTGTATTTCAAAGCCTGGCTGAAGTATAATGAACCAAAT
TGATTCCTTCCAAACAAGTGAAACCCATGAAGTAATGAGGAGGAAAAAAA
AAAAAACTTCCCATGAACAAATATGATTTATTGAAAAAGTACAAGCCGAT
GTGCCGTTTCCAGTATAGTAAGTTACTACCCCCCCCACAAGGAGCCATGG
GAGGAAGGTTAAGGGGAGCAAGCCACCTCGAAAAAGAAGAGTCCCCATGA
CTTGCTTTCCTTCTTTTGCTCAAAGCCAGCAGATATCAAATGGAGACCGT
ATAGCATAGGTGGCCCCCAGGTGTCCAAGACTGCAGACATGGGAGAGTCC
AGCCTTAGCAAGAAAGGCAAGTCTTACGTGACCTATTATGTGACATGTTT
CCTGACTGGGACCACTAACCCCACAGCTCCATCCTATTCATTGTATTAGC
CTTGGTGATATTTGTTGAAAACTATTAATCATTGAAGAAGTGAGCCTGTA
ATCCCATATCTTATGGTCAATGAAAAATATGTTCCATATTCAAGTAAACC
GTAATGAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_i19.g1 MSMg01no264_i19.g1 CHROMAT_FILE:
MSMg01no264_i19.g1 PHD_FILE: MSMg01no264_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:46 2005
         (285 letters)



>mm_chr12_111288313_111288996
          Length = 684

 Score =  495 bits (256), Expect = e-144
 Identities = 277/284 (97%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgagagaggaaaaaagtcaaaagcttataaacaaagatgttgatgccgctggggcct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||
Sbjct: 483 tattgagagaggaaaaaagtcaaaagcttataaacaaagatgctgatggtgctggggcct 424

                                                                       
Query: 61  ttctttataactgaataagcggtcttaattcaataaagtgcaatcacaaaaggcttagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttctttataactgaataagcggtcttaattcaataaagtgcaatcacaaaaggcttagat 364

                                                                       
Query: 121 tggaagtctcttgtgtatttcaaagcctggctgaagtataatgaaccaaattgattcctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tggaagtctcttgtgtatttcaaagcctggctgaagtataatgaaccaaattgattcctt 304

                                                                       
Query: 181 ccaaacaagtgaaacccatgaagtaatgaggaggaaaaaaaaaaaaacttcccatgaaca 240
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 303 ccaaacaagtgaaacccatgaagtaatgaggag-aaaaaaaaaaaaacttcccatgaaca 245

                                                       
Query: 241 aatatgatttattgaaaaagtacaagccgatgtgccgtttccag 284
           |||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 244 aatatgaaacattgaaaaagtacaagccgatgtgccgtttccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)