BAC Information

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BAC

Clone NameMSMg01-265H07
Chromosome12 (Build37)
Map Location 28,666,630 - 28,666,871
singlet/doubletsinglet
Overlap geneLOC669327
Upstream geneSox11, LOC100043009
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265H07.T7 (MSMg01no265_h07.b1)MSMg01-265H07.TJ (MSMg01no265_h07.g1)
ACCAG406713AG406714
length868864
length of high quality
(start - end)
317 (97 - 413)242 (127 - 368)
definitionCHROMAT_FILE: MSMg01no265_h07.b1 PHD_FILE: MSMg01no265_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:56 2005CHROMAT_FILE: MSMg01no265_h07.g1 PHD_FILE: MSMg01no265_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTATCTCCCTTCTCNTTTTTTTTTTTTTTAAAAACCNTNNNCAAA
TCTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATCAAACCTTCAAAGAAGACCTAATTCCAATACTCCCCAAACT
ATTTTACAAAATAGAAACAGAAGGTACTCTACCCAATTCATTTTATGAAG
CCATGATTACCCTGATACCTAAACCACACAAAGACATAACAAAGAAAAAG
AACTTCAGACGAATTTCCCTTTTTAATATCAGTGTGAAAATACTCAATAA
AGTTCTTGCAAACAGAATCCAAGAACCCATCAAAACGATCATCCATCACG
ATCAAGTAGGCTTCTTCCCAGAGATGTTGGAATGGTTCAGTATACTAAAA
TCAATCAACGTAATTTTTTTTATTTCTCCCCCCACCCCCAAAAAATATGA
TCATCTCGTTATATGCTGAGAAAGCATTTGATAAAAATACAAAAAGCTTT
AATGGGAAAAGTCTTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACA
TTAGTAAAAAGAATCTACAGCAAATCAGTAGCCAACATCAAACTAAATGG
AGAGAAACTTAAAAGCATTCTTACTAAAGTCAGGGACTACACAAGGGCTG
ACCACTTTTCTCCCTTAACTATTCAACATAATAACTTTGAATTTCCTAGC
CTTGAGCCAATTTATACCTTCAAACAGGAGTATCCATAGGTGTATACCCA
CTTTGTTAAAGTGAAATAAAGCTATAAGTATCCCCCTCATTTTCGCACTA
TTGATCTCAGCATAGGTTACACTCTTTAAGGTGGAACCCTCTCAAATATT
TCCCTCTCTCAGAGAAAA
TCTTTTTTNTTTCCTCCNCCCNCCAATTTTTCGTCGTTTATTTTTNNTTT
TCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTACCCAGCCTACTGAATCAGTC
GCTGCTGGCGGATGCTGGTGATTCTTGGGGCTCCTAAAATGCTATATGAA
GGGAAAATGATTGTAGTGATAATGAGTTTTGTTCCCCGAGGTTCAGGCAA
CAAGCAGTTGCTTTATTATCCTGGAATAAAATACTTTACACTATGCATCC
CGGACCATTTTAGGTAAGTGATCATTTTCACAGATGCTAAGCATTCCCTC
ATAGCGATGTCATTGGTTAGAACTGTATCTCATAAAGGCAGGCTGTGCCA
GGTAGACCGACCTTTGTAATATTTTCCCCGCCCCCCCCCACTTCAGTGCT
AATGGCCTCTGTATGCACACCACACCTGTTTGCAAAAAAAAAAAAATGCT
CTAGAGATGTTCAAAGACAGCTCTTTTTTTTTTTCCTGACCCAAATTAAT
CGGCCAAGTTCACTTGTGAAACTCCTTGCAAAGGTGTAAATTTAAAGAAA
TGGCCTCTTCAACCTTGAAATTTCCATACCTTTGCATGAAAATAGGCCTT
TTTAATGACCTATATATGAATTGTTTGGTTCTCCCGGAACTGGTTTGCTG
AAAAAATTATGATATCGTGTCTCCTTAAAGGCCAGAAAGATTATGGTTAT
TAATAAAAAAGGCTTTTAAAATGTTATCCAATACTCACACATTCACAATT
ATTATCCTTTCATTTTTTCTCTCTCTCTCCCCCATTTTATTTTTGTGTAT
AACTCCATAATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_h07.g1 MSMg01no265_h07.g1 CHROMAT_FILE:
MSMg01no265_h07.g1 PHD_FILE: MSMg01no265_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:57 2005
         (242 letters)



>mm_chr12_28666430_28667071
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacccagcctactgaatcagtcgctgctggcggatgctggtgattcttggggctccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tttacccagcctactgaatcagtcgctgctggcggatgctggtgattcttggggctccta 383

                                                                       
Query: 61  aaatgctatatgaagggaaaatgattgtagtgataatgagttttgttccccgaggttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaatgctatatgaagggaaaatgattgtagtgataatgagttttgttccccgaggttcag 323

                                                                       
Query: 121 gcaacaagcagttgctttattatcctggaataaaatactttacactatgcatcccggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaacaagcagttgctttattatcctggaataaaatactttacactatgcatcccggacc 263

                                                                       
Query: 181 attttaggtaagtgatcattttcacagatgctaagcattccctcatagcgatgtcattgg 240
           ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 262 attttaggtaagtgatcattttcacagatgcaaagcattccctcagagcgatgtcattgg 203

             
Query: 241 tt 242
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)