BAC Information

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BAC

Clone NameMSMg01-266N06
Chromosome12 (Build37)
Map Location 16,980,160 - 16,980,446
singlet/doubletsinglet
Overlap geneRock2
Upstream geneLpin1, Ntsr2, Greb1, E2f6
Downstream genePqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266N06.T7 (MSMg01no266_n06.b1)MSMg01-266N06.TJ (MSMg01no266_n06.g1)
ACCAG407713AG407714
length753737
length of high quality
(start - end)
278 (46 - 323)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no266_n06.b1 PHD_FILE: MSMg01no266_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:43 2005CHROMAT_FILE: MSMg01no266_n06.g1 PHD_FILE: MSMg01no266_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTGAAATAATTATTTTGAAGCTTTTTTTTTTTTCTGTTTCCC
TTCATTGTAAGGTTGTATTCCATAAAAGCTAAGCTATTCTTATACCTGCA
TTCATGTAAGAGATAGTGATGTGTGTAGTGGTGCACGCCTTCATTCCCAG
CACTCAGGAGGCAGAGAAACGCAGGTCTCTAAGTTCAAGGCTAGACTGGT
CTATGTAGCACAGGCCAGCCAGTGCTAAACAGTGAGACTTTGCCTCCAAA
AACAAAACAAAACAACAACAACTTTTTCGTAGGACGGTGTTGTGGGGTGG
TGATCTGCCCATTTNGTCAGATCCTTNGACAGNGCCCCACTNTAGTGTAT
GTATTTTATNAGGATATCCCCCCCCTTCAAAAAAAAAAAGAACAGAGTGG
CGGGGCAGTGAAGGCTCCAGAGGATACCAGACTGGATGTTCCAGCTCCCA
GAGAAGTAGGCAGCGCTGTACTGCATATAGGCTTTACACCGCGACGATGT
GTTTTGTCTCGCCCCTCTGTGCCTTCCCTCCCTCCCGTTTATTTGCTTTT
TGTTACATTTCTACCCCCTTATTGCTTATTCCCCCCCCCTCCCTTTTTTT
TCCTTCTGCTCCCTTTCCTCCTATTATACTTTCTTCATCTCCCCTTTCTG
TCTCCCCCCCTTTTTTTTTTCTTATCTCATCTGCTCATTTACTTTCCCTC
TTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGCCAGGAAGATGTTTTCAGA
TATCACCTGTACTAATAGGCTCCGATGAACTAGGTAAGTAAGGCAAGGAA
TCTTCTTCAGAGTCAAAGTCAAGAAGCGTGTGAGAACTGGAGGGCTTAGT
GGCAATACTGAGAGAGGTAGAGGACCGCTGGTAGGTGAAAGACATGGATT
CCATAGTGTGTGACTGAGTGATATGGACTAAATACCCACAAGCAAGAAAG
TGAGGCAGAGAAGAGAGAAGAAAATTAGTGAAAACTTAAAAAAACAGATA
GGCACTACATGTGATNNATACTCTCCCCCNACTTCCCACTTATTTACTTG
TTCGTTTTTAATCAAACAAGTCCCCAAGGTCATGAGAATCCCATTCTAAG
TAGGATTTCCTTTAAAGAAATGGCAAACCTTTTCCTTAAAAGTAAAGTCA
TTCATGGAATCAAAGCAATCACCTGACTTAAATTTAAGGCAAATGCAAGG
GCTGACCAAGGATGTGTACCTGGAAATCCATCATCAGGCTCAGCATCGCC
TGGTCCACTGCCTATACTGGAACTGTCCATACCAATATGCAAGGCCTGGA
GCTGTGACCGCAGCTGTTCAATGTCGCTGTCTTTACTGTCCAGGGTCATC
TGGAGTTCTATTCGAATTTGGCTCTCTTCAGCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_n06.g1 MSMg01no266_n06.g1 CHROMAT_FILE:
MSMg01no266_n06.g1 PHD_FILE: MSMg01no266_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:43 2005
         (291 letters)



>mm_chr12_16979960_16980649
          Length = 690

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%), Gaps = 1/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagccaggaagatgttttcagatatcacctgtactaataggctccgatgaactaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 caaagccaggaagatgttttcagatatcacctgtactaataggctccgatgaactaggta 428

                                                                       
Query: 61  agtaaggcaaggaatcttcttcagagtcaaagtcaagaagcgtgtgagaactggagggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agtaaggcaaggaatcttcttcagagtcaaagtcaagaagcgtgtgagaactggagggct 368

                                                                       
Query: 121 tagtggcaatactgagagaggtagaggaccgctggtaggtgaaagacatggattccatag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tagtggcaatactgagagaggtagaggaccgctggtaggtgaaagacatggattccatag 308

                                                                       
Query: 181 tgtgtgactgagtgatatggactaaatacccacaagcaagaaagtgaggcagagaagaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgtgtgactgagtgatatggactaaatacccacaagcaagaaagtgaggcagagaagaga 248

                                                           
Query: 241 gaagaaaattagtgaaaacttaaaaaaacagataggcactacatgtga 288
           ||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gaagaaaa-aagtgaaaacttaaaaaaacagataggcactacatgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)