BAC Information

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BAC

Clone NameMSMg01-268D21
Chromosome12 (Build37)
Map Location 97,672,410 - 97,846,068
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277, LOC382626
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268D21.T7 (MSMg01no268_d21.b1)MSMg01-268D21.TJ (MSMg01no268_d21.g1)
ACCAG408738AG408739
length722717
length of high quality
(start - end)		321 (45 - 365)331 (387 - 717)
definitionCHROMAT_FILE: MSMg01no268_d21.b1 PHD_FILE: MSMg01no268_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:29 2005CHROMAT_FILE: MSMg01no268_d21.g1 PHD_FILE: MSMg01no268_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,845,755 - 97,846,068)(97,672,410 - 97,672,740)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGATTGTAAATGAATCATTAAAGATATTTTGTCTCTTTGATTTCCT
TTTCTAAGAAATTGCAATCTCACAATTAGTCTTGATTGATGCATATTGGG
ACACATCTTTCATTAAAGAAAATTAAAATATGAAAGCATCTTCAATAAAT
AGTGCTGGTCTAACTGGCTGTTTGTATGTAGAAAGGTGAAAATAGAACCA
TATTTGTCACCTTACATAAAGCTCAAGTCTAAGAGGATCAAGGAGCTCAA
CATAAAACCAGATGCACTGAATCTAACAGAAGAGGAAGTGGAAAAGAGTC
TTGAACTCATGGTTTAGTGTTAAATCTCCCCCCCCCCAACTTCACTGGCT
CATGCTCTAAGAACAAGAATTAATAAATGGAACATCATAAAACTTGAAAG
CTTCTGTAAGGCAAAAGACATAGTCAATAAGACAAATCAGCAATCTACAG
AGTGGGGAAAAAAATCTTCCTTAACTCACATCCAATAGATGTCTAATATC
CAAATATATATATATATATATATATATATATATATATATATATCAAAAAA
CTAACCACCAAAAAACCAAACAACCCAATCAAAAACTGGGGTATAAAACT
AAACTGATAATTCACACCAGAGGAATCTTGATTGCCTGAGAAGCACCTAA
AAATATTCAAAGTCCTAATCAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGGTTCTAGCTAGATATGTATCAGA
GGATGGTCTAGTTGGTTATCAATGCCAGGAGAGGCCCTTGGTCCTGTGAA
GGCTTTATGCCCTAGTGTAGTAGAATTCCAGGACCAGGAAGAGGGACTGG
GTGGCCTGGTGAGCAGAAGGAGGCATAAGGGGATGGGGGGGACAGGGTTT
TTGGAGGGCAAACCAAGAAAGGGGTCTAGCTTCCTCCAATTATGCCCTAT
CTTATTTGCTACTGTGATTATTTATTGGTAATGTCACACATTTAACAATC
TTTTCATGCATTAGATTTTTTTGGCCCCCCCCTTCAGGGTTCAATCTGTA
AATTGATTTGGAAACCAAATTGCTTCCAGAGATGTTTCTAATACTCTACC
TATATTTTTCCTTCATAAGTCCCTTGATTCATGCTCACATCTTCTAAAAA
AAATACAACTAGACTATCTCCAAGGACCCCAAAATTCTCTACAGTTCTGC
AATTTCCCATGTTATATTTTTAAATTTACCACCAGAAATAAAGTGGTAAA
ACCATATATAGATAGACATGTAATCCCAAATGTCCTTTCCAGGTTGAAAA
TTCCAAGAGAAACTGCAGGAATTGTATGACATGTTTCTCCTAAAGGCCAT
GTGTGTTAAGTGTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_d21.b1 MSMg01no268_d21.b1 CHROMAT_FILE:
MSMg01no268_d21.b1 PHD_FILE: MSMg01no268_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:29 2005
         (321 letters)



>mm_chr12_97845743_97846463
          Length = 721

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgattgtaaatgaatcattaaagatattttgtctctttgatttccttttctaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gaattctgattgtaaatgaatcattaaagatattttgtctctttgatttccttttctaag 267

                                                                       
Query: 65  aaattgcaatctcacaattagtcttgattgatgcatattgggacacatctttcattaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaattgcaatctcacaattagtcttgattgatgcatattgggacacatctttcattaaag 207

                                                                       
Query: 125 aaaattaaaatatgaaagcatcttcaataaatagtgctggtctaactggctgtttgtatg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 206 aaaattaaaatatgaaagcatcttcaataaatagtgctggtctaactggctgcttgtatg 147

                                                                       
Query: 185 tagaaaggtgaaaatagaaccatatttgtcaccttacataaagctcaagtctaagaggat 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tagaaaggtgaaaatagacccatatttgtcaccttacataaagctcaagtctaagaggat 87

                                                                       
Query: 245 caaggagctcaacataaaaccagatgcactgaatctaacagaagaggaagtggaaaagag 304
           |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 86  caaggagctcaacataaaaccagatgcactgaatctaacagaagagaaagtgggaaagag 27

                         
Query: 305 tcttgaactcatgg 318
           ||||||||||||||
Sbjct: 26  tcttgaactcatgg 13


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no268_d21.g1 MSMg01no268_d21.g1 CHROMAT_FILE:
MSMg01no268_d21.g1 PHD_FILE: MSMg01no268_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:29 2005
         (331 letters)



>mm_chr12_97672210_97672940
          Length = 731

 Score =  632 bits (327), Expect = 0.0
 Identities = 330/331 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggttcaatctgtaaattgatttggaaaccaaattgcttccagagatgtttctaatactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggttcaatctgtaaattgatttggaaaccaaattgcttccagagatgtttctaatactc 260

                                                                       
Query: 61  tacctatatttttccttcataagtcccttgattcatgctcacatcttctaaaaaaaatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacctatatttttccttcataagtcccttgattcatgctcacatcttctaaaaaaaatac 320

                                                                       
Query: 121 aactagactatctccaaggaccccaaaattctctacagttctgcaatttcccatgttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactagactatctccaaggaccccaaaattctctacagttctgcaatttcccatgttata 380

                                                                       
Query: 181 tttttaaatttaccaccagaaataaagtggtaaaaccatatatagatagacatgtaatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaaatttaccaccagaaataaagtggtaaaaccatatatagatagacatgtaatcc 440

                                                                       
Query: 241 caaatgtcctttccaggttgaaaattccaagagaaactgcaggaattgtatgacatgttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaatgtcctttccaggttgaaaattccaagagaaactgcaggaattgtatgacatgttt 500

                                          
Query: 301 ctcctaaaggccatgtgtgttaagtgtaaat 331
           || ||||||||||||||||||||||||||||
Sbjct: 501 cttctaaaggccatgtgtgttaagtgtaaat 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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