BAC Information

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BAC

Clone NameMSMg01-271H06
Chromosome12 (Build37)
Map Location 57,718,567 - 57,718,880
singlet/doubletsinglet
Overlap genenone
Upstream geneGarnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9
Downstream genePax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271H06.T7 (MSMg01no271_h06.b1)MSMg01-271H06.TJ (MSMg01no271_h06.g1)
ACCAG411004AG411005
length745735
length of high quality
(start - end)
319 (45 - 363)288 (74 - 361)
definitionCHROMAT_FILE: MSMg01no271_h06.b1 PHD_FILE: MSMg01no271_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:20 2005CHROMAT_FILE: MSMg01no271_h06.g1 PHD_FILE: MSMg01no271_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTACTAAGTTTTACATAACAAAAGATCCAGGCTTTAGATCAATCAC
AGTTGGTGTTATGTACAGAGAACATCACACTTAGTATAGGCTATGTATGG
TGTTATGTATAGACAAGGAAGATGGACTCCAGACCACATTTTATGACCAG
TACCTTGCACAGACTAATTTACTGTGCATGCTGAAAACCAACCACTAGCA
CTTCAGTTGAAGCCTTTAAAACAAGGTAGCCATACAGTATAAAAACATTG
TAATAAGGCCCTTAAAAATAGCTTCACTCTGTTTTGAGGTCATCTTCAAA
TATTTACTGCACTTTGTTAAAGCGCCCCCCCCACTCTTTCTATTGGCAGC
AGTTTAAACTACATACCAAAGCAGTCATTCTAGATAAGTGTTTGTTGATA
CTTTATTAAGGCAATTTCTCAAGGACTAAAGATTCACACATTCAATGTTG
ACAGCACTAACAAGAATGTCACTTTAGCTTTGGAACTTCTGAGAATGTTT
CACTGCATACTTACCCTTATAGTTCATCCTGAGTCAGGATAGAACAGCCA
GGAGAGCTGGAGCTTAAGGCGAGCCTTGAAGACAGACTGTGGTAGCCCCA
GAGGACCTATAGGAGGAAGGGCCCCCTAAGTAGACAGTATTAGAAAGAAC
AGTTTATCAGGTTATGGAAGGAGTAAGCTCACTTAAAGCTACCGG
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATAATTCCCCTTTAAACAAATGATAA
ATGAGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAGCCATAA
TTACTATAAAATAGCTTGGTATAACTTTAACCAAGCAAGTGAAAGATCTG
TATGACAAGAACTTCAAGTCCCTAAAAAGAGAATTGAAGGAGATATCAGA
AGATGGAAATATCTCCCAACCTCATTGATCAGTAGGACTAATGAAGTAGG
GACTTCTTAATACCAGGCAACCACTCCTTGCAAGGGTAGGTAGGACCTGC
AGCTGCCTGCTTATTTTTAGACCCCCCCCCGATGTGAAGTGCCATGCCAG
GAGAGGAGCCTTAGCTAGTTCTTGGATTAGATTGGATCTTGGAAGAAGTG
GATCTTGCATACATTTCTGGAGAATTTCATCAGGATCCAGGAATCTGAGA
AAAGAAAAGAACATACAAAGGTATACGGAGAAGCATGTATTCCTCCCCCT
CCAACCAGCTTCACCTTTTTGTTTTATGTGTGTGAGTGGCTTGTCTGCAG
TTATATCCATGCACTGTGGGTGCTAGGAATTGACCCCAAGGTTCCCTGTG
AATGCAGCCTGTTCATTGCCACTGTTTTAACTAGCATAGACTTTATATCC
ATTATTTTATTATCATAACTTATTACTGCCAGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_h06.b1 MSMg01no271_h06.b1 CHROMAT_FILE:
MSMg01no271_h06.b1 PHD_FILE: MSMg01no271_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:20 2005
         (319 letters)



>mm_chr12_57718363_57719081
          Length = 719

 Score =  600 bits (310), Expect = e-176
 Identities = 313/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttactaagttttacataacaaaagatccaggctttagatcaatcacagttggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttactaagttttacataacaaaagatccaggctttagatcaatcacagttggtg 264

                                                                       
Query: 65  ttatgtacagagaacatcacacttagtataggctatgtatggtgttatgtatagacaagg 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatgtacagagaagatcacacttagtataggctatgtatggtgttatgtatagacaagg 324

                                                                       
Query: 125 aagatggactccagaccacattttatgaccagtaccttgcacagactaatttactgtgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagatggactccagaccacattttatgaccagtaccttgcacagactaatttactgtgca 384

                                                                       
Query: 185 tgctgaaaaccaaccactagcacttcagttgaagcctttaaaacaaggtagccatacagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgctgaaaaccaaccactagcacttcagttgaagcctttaaaacaaggtagccatacagt 444

                                                                       
Query: 245 ataaaaacattgtaataaggcccttaaaaatagcttcactctgttttgaggtcatcttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ataaaaacattgtaataaggcccttaaaaatagcttcactctgttttgaggtcatcttca 504

                         
Query: 305 aatatttactgcac 318
           ||||||||||||||
Sbjct: 505 aatatttactgcac 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)