BAC Information

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BAC

Clone NameMSMg01-272D09
Chromosome12 (Build37)
Map Location 100,652,896 - 100,653,186
singlet/doubletsinglet
Overlap geneChes1
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779
Downstream geneLOC100039892, 2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272D09.T7 (MSMg01no272_d09.b1)MSMg01-272D09.TJ (MSMg01no272_d09.g1)
ACCAG411559AG411560
length761802
length of high quality
(start - end)
---291 (68 - 358)
definitionCHROMAT_FILE: MSMg01no272_d09.b1 PHD_FILE: MSMg01no272_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:18 2005CHROMAT_FILE: MSMg01no272_d09.g1 PHD_FILE: MSMg01no272_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTGCGGCCGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGGGCAAATTTTCATGGATTTTTTAGTGCCTC
AAAGTTGAAAGATAGGAACGCTTGGCTTTGTGGCTTTCTGCAGTTACTAT
CTGGGGACAGGAACTAAAGAAGGAAAAGGAAAATAATAATAATGTTAGCT
TTTGTTTTATTTTTAACCATCTGTTTATTTGTATGATTGTTGGGAGTGGG
CAGGTACTCCGGCACCACACTTAGTATGTGTTTTTAAGTCTGAGGACAGC
TCAGGGCAGTGGGCTCCGCCCTTTCACTTTGTGAGCCCCAGGGATCAAAT
TCAGGTTGTCATGCTTGCTCACCCCCACCTTTATCCACTTAGCCATCTTG
CTGGGCCTTTGCTTTGTTTTTGAAATAAAAGTGGGGGTGGGGGGGCTGGC
TTCTTCAACTATATCACCATTCTTTTACTCTCCCTGTTATCTGCCACCTA
TAATCTCCCGTATCCTACACTCTTTTCTTTTCTTTTTTTCTACTCTTAAT
TTTATTCTCTATTTTCTCCTCCCATTTATGCTGTATCTTTGTTATTTCTC
TTTCTCCTCCCTATCTTCTTCATTGATCAACTCATCATCCAATATTTTGA
TGCACGCAAGACATTGCTTACTCGCTCTCACTTATCCTTCCCCTCCTTCT
TATCTCACCACTTTTCTTCCTCTTCACCCAACTTTTTACCCCCCCTTTGA
CTCTTACAGTCATTTGTATAATTATGATCTACACGCTTCCGCTGGTATCA
TA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_d09.g1 MSMg01no272_d09.g1 CHROMAT_FILE:
MSMg01no272_d09.g1 PHD_FILE: MSMg01no272_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:18 2005
         (291 letters)



>mm_chr12_100652696_100653386
          Length = 691

 Score =  532 bits (275), Expect = e-155
 Identities = 287/291 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggcaaattttcatggattttttagtgcctcaaagttgaaagataggaacgcttggct 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| 
Sbjct: 491 aggggcaaattttcatggattttttagtgcctcaaagttgaaagaaaggaaggcttggcc 432

                                                                       
Query: 61  ttgtggctttctgcagttactatctggggacaggaactaaagaaggaaaaggaaaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 ttgtggctttctgcagttactatctggggacaggaactaaagaaggaaaaggaaaataat 372

                                                                       
Query: 121 aataatgttagcttttgttttatttttaaccatctgtttatttgtatgattgttgggagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aataatgttagcttttgttttatttttaaccatctgtttatttgtatgattgttgggagt 312

                                                                       
Query: 181 gggcaggtactccggcaccacacttagtatgtgtttttaagtctgaggacagctcagggc 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 311 gggcaggtactccggcaccacacttagtatgtgtttttaaatctgaggacagctcagggc 252

                                                              
Query: 241 agtgggctccgccctttcactttgtgagccccagggatcaaattcaggttg 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agtgggctccgccctttcactttgtgagccccagggatcaaattcaggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)