BAC Information

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BAC

Clone NameMSMg01-273A07
Chromosome12 (Build37)
Map Location 16,243,475 - 16,243,788
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneLpin1, Ntsr2, Greb1, E2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273A07.T7 (MSMg01no273_a07.b1)MSMg01-273A07.TJ (MSMg01no273_a07.g1)
ACCAG412140AG412141
length740745
length of high quality
(start - end)
318 (40 - 357)293 (69 - 361)
definitionCHROMAT_FILE: MSMg01no273_a07.b1 PHD_FILE: MSMg01no273_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:19 2005CHROMAT_FILE: MSMg01no273_a07.g1 PHD_FILE: MSMg01no273_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
ACCTCAGTGCTAGAAAATATCTCTCTCTCTCTCTCTCTCTCTCTCTCTTT
CTGTGTGTGTGTGTGTGCGTGTGTATGTTAGACATGTGTGCAAGCATATG
CATGTGTGTATGTTATGCATGTTTGCATATGTGTGTGTGTGTGCTTCTAC
ATGTGTGTTATGTATGTGTGCTTATGTGTATGTGTGAGTCCACTTGCTGG
TTTGGGTATACTTGGAAGCCTGTTCTTGACCGCAGAACATCTTCATCAGT
CCCTCTTTATTTTATTTCCAAAGTTTGAATGTCCCACTAACCCTCACCAT
TTTGCCTATTTTTTCTCCCCCCCCCCCCTCCTGGCTTCACCTGTTTCAGC
ACATCAGTGCTGAGATTATTGAAACATGAGACTATACTTGGCTTTTACAT
GGGTTTTTGGGATAAATTCCAGTCGTCATGCTTGCATACCGAGCATCTGA
CATAGATACTAAGTCATCTTCCCAACCCAGGAAGATTATTTTCAAATATA
AAAGAGAGCATACTCCTTCTTAGGCTCTTCAGACGAATTCAATTTTGGTG
CCAAAGGTCTTGGACTTGCACAGGTCTTACTCAAATGTACCACACACAGA
GTTAATACTGAGTAATCAGTGTCTACTAAACCGGACAGCCTAACCGGCAC
TGCTGGGAGGGAGTAAGCCTGCTTCTTCCACGTGATAAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTACTGGACCTTCAAAGAAGACCTGATACCAAT
TTTCCTCAAACTATTCCATAAAAGAGAAAAAGAAGGGGTACTACAGAACT
CATTCTATGAAGCTACAATTATTCTGATATATAAACCACATGAGGTCCCA
ACCAAAAAAAGAGAACTTCAGACCAATCTTACTTATGAATATCGATGCAA
AAATATTTAATAAAATTCTTGCAAATCGAATCCAAGAACACATCAAAACC
ACCATTCACCACGATCAAGTAGGATTTATCCCAGGGATACAAGGTTGGTA
CAATATTCTTTTATTTCCTTCCCCCCCTCCACTATATAAACAAAACAAAC
TCAAAGGAAAAAAATATCACATGATCATCTCCTTAGATGCAGAAAAAGCA
TTTGACAAAATACAACACCCCTTCATGTTAAAAGTATTGGAGAGATCAGA
AATTCAAGGCCCATATTTAAACATAATAAAAGCAATTTACTACAAATGAA
CAGCCAATATCAAATTAAATTGAGACATATTTGAAGCAATCCTGCTGAAA
TAGGAATAAAACAAGGATGCCCACTCTCCCCATATCTGTTCAATACAGTA
CTTGAAGTATTAGCTAGAACAATATAACAACATAGAGTTCAAGGGGACAC
CGGTTGGCAAAGAAAAAATAAAGATGTCATGATTTGCAGATGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_a07.b1 MSMg01no273_a07.b1 CHROMAT_FILE:
MSMg01no273_a07.b1 PHD_FILE: MSMg01no273_a07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:19 2005
         (318 letters)



>mm_chr12_16243271_16243988
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacctcagtgctagaaaatatctctctctctctctctctctctctctctttctg 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacctcagtggtagaaaatatctctctctctctctctctctctctctctttctg 264

                                                                       
Query: 65  tgtgtgtgtgtgtgcgtgtgtatgttagacatgtgtgcaagcatatgcatgtgtgtatgt 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtgtgtgtgtgtgtgtgtgtatgttagacatgtgtgcaagcatatgcatgtgtgtatgt 324

                                                                       
Query: 125 tatgcatgtttgcatatgtgtgtgtgtgtgcttctacatgtgtgttatgtatgtgtgctt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatgcatgtttgcatatgtgtgtgtgtgtgcttctacatgtgtgttatgtatgtgtgctt 384

                                                                       
Query: 185 atgtgtatgtgtgagtccacttgctggtttgggtatacttggaagcctgttcttgaccgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtgtatgtgtgagtccacttgctggtttgggtatacttggaagcctgttcttgaccgc 444

                                                                       
Query: 245 agaacatcttcatcagtccctctttattttatttccaaagtttgaatgtcccactaaccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaacatcttcatcagtccctctttattttatttccaaagtttgaatgtcccactaaccc 504

                         
Query: 305 tcaccattttgcct 318
           ||||||||||||||
Sbjct: 505 tcaccattttgcct 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)