BAC Information

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BAC

Clone NameMSMg01-273H11
Chromosome12 (Build37)
Map Location 9,126,052 - 9,126,295
singlet/doubletsinglet
Overlap genenone
Upstream gene1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273H11.T7 (MSMg01no273_h11.b1)MSMg01-273H11.TJ (MSMg01no273_h11.g1)
ACCAG412458AG412459
length728722
length of high quality
(start - end)
298 (67 - 364)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no273_h11.b1 PHD_FILE: MSMg01no273_h11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:51 2005CHROMAT_FILE: MSMg01no273_h11.g1 PHD_FILE: MSMg01no273_h11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAACAACTCTCCTAAAGAAATACAGGAGAACACTGCTAAAGAGTTACA
AGTCCTTAAAGAAAAACAGGACCACACTGCTAAAGAGTTACAAGTCCTTA
AAGAAAAACAGGAAAACACAACCAAACAGGTAGAAGTCCTTATAGAAAAA
CAGGAAAACACATCCAAACAGGTGATGGAAATGAACAAAACCATACTAGA
CCTAAAAAGGGAAGTAGACACAATAAAGAAAACCCAAAGTGAGGCGACGC
TGGAGATAGAAACCCAAGGAAAGAAATCTGGAACCATAGATGCCAGCATC
AGCAACAGAATACTAGAGATGGACCAGAGAATCTCAGGTGCAGAAGACTC
CATAGAGAACATCGGCACAACAATCAAAGAAAATGGAAAATGCAAAAAGA
TCCTAACTCAAAACATCCAGGAAATCCAGGACACAATGAGAAGACCAAAC
CTACGGATAATAGGAGTGGATGAGAATGAAGATTTTCAACTCAAAGGACC
AGCAAACATCTTCAACAAAATTATTGAAGAAAACTTCCCACATCTAAAGA
AAGAGATGCCCATGAACATACAAGAAGCCTACAGAACTCCAAATAGACTG
GACCAGAAAAGATATTCCTCCCGACCCATAATAATCAGAACACCAAATGC
CCTAAATAAAGATAGAATACTATAAGCA
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTCTTTACCTGTGTATTGTTTTTC
CCTGACTTTCAGTTTTTGGCTTTGTTCCTTTGTCATGGAGTACAAAGTCA
GGATTCTGTTATTCATGTGTGGCCTGGAAAAACTTCCTTTTCATGTATAG
CTATTATGTTTTTTAATTTCACTACCTCCTTAGGCAGTAGAAAGAGGGTG
ACGTCATCCAAATCTCACCCATTAAGTGAGTGTTACCTGCTGGCAGGTGT
GAACTGGAGCTTGAGAGATGCTTATGGCCATGGTAGCAGTGAGGGAATCT
AAGGATCTCTTTCTTCATCCCGNTCCCCCCCGTTTGATTTGAGCTGTGAA
ACACTACATGTGGCTTTTTATGTAACAACAAAACACCCCTTTAAAATATC
TTTTCTTTCCCATCTAGTTTTACTGATTTTTTTTTCTGAGCCCACCCAGG
TGCTAAGGAGACTCACACAACACTTGGTGTAAGCTCCTACCTTTTGGCTC
AAAAATGTATCTGGCTGTCTTGTTCTTTATTTAGGGAGAACTCCACCATT
TTGGAGCTGATGTGTTTGAAGGAAAAAAAAAGTTTCCCGGCTGAGAGGGA
AAATTATCAACTTTTGGTAAAGCTTTTTGTTAAGACCCTCCAAATGAAGT
CGGATTATATCTGCGAAAAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_h11.g1 MSMg01no273_h11.g1 CHROMAT_FILE:
MSMg01no273_h11.g1 PHD_FILE: MSMg01no273_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:51 2005
         (244 letters)



>mm_chr12_9125852_9126495
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgttctttacctgtgtattgtttttccctgactttcagtttttggctttgttcctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgttctttacctgtgtattgtttttccctgactttcagtttttggctttgttcctttg 260

                                                                       
Query: 61  tcatggagtacaaagtcaggattctgttattcatgtgtggcctggaaaaacttccttttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatggagtacaaagtcaggattctgttattcatgtgtggcctggaaaaacttccttttc 320

                                                                       
Query: 121 atgtatagctattatgttttttaatttcactacctccttaggcagtagaaagagggtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtatagctattatgttttttaatttcactacctccttaggcagtagaaagagggtgac 380

                                                                       
Query: 181 gtcatccaaatctcacccattaagtgagtgttacctgctggcaggtgtgaactggagctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcatccaaatctcacccattaagtgagtgttacctgctggcaggtgtgaactggagctt 440

               
Query: 241 gaga 244
           ||||
Sbjct: 441 gaga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)