BAC Information

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BAC

Clone NameMSMg01-273P05
Chromosome12 (Build37)
Map Location 34,003,230 - 34,003,544
singlet/doubletsinglet
Overlap geneAtxn7l1
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream gene4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273P05.T7 (MSMg01no273_p05.b1)MSMg01-273P05.TJ (MSMg01no273_p05.g1)
ACCAG412817AG412818
length735896
length of high quality
(start - end)
320 (40 - 359)47 (70 - 116)
definitionCHROMAT_FILE: MSMg01no273_p05.b1 PHD_FILE: MSMg01no273_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:25 2005CHROMAT_FILE: MSMg01no273_p05.g1 PHD_FILE: MSMg01no273_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGATAGCCCGGGAAACTCTTTCTCAGTACCTGCTCCCCCACCCCCAACC
CCCTCCAAATGTTAGGACCAGAATGGCTTGGGAGGAGTTTGCTCCTTAAA
GAGATAGGACTTTACCTCACCTTTTCACCACTCCTACACACTGCCAGCGA
CCACAGGCTACCTCAGCCACTAAGTTATTTGACACAGACTCATCCAGGGT
GAGTGGGCTACACCGCTCAGTTCAGTTCAGTTCAGTTCTGTTCTGTCAGG
TCACTCCCCAGCATCCTTAGGTTTCTGGCGTTTTCTCAGCCATCTGGTCA
TTCCACACTTTCCATTCAGCTGACAGCAAAATCTCCACTTCTTCAGCATC
TACCCCCTCTATGTGTCAGGCAGTGAGCCAGCTACTGCCCACTCCGTGGC
TCTCAAACCGTCACATACCTGCTAGCCTCCTAGCAAGAGACCTTACAGAA
GTTTAAGTACAGTTATCACCAAAGACTAGGGCTGTGCTGGGCCTCAGTAG
CTGGAAGGAGAGTCCAGGCTTGTCTGTCCAGTTCCAAAGCTGGTGTCCCT
TTCCCCATGCTGTTTGCCTGGGATAGTCCCCTTCCCTCTACACTTCAGAA
AGACCACTTCTCCAGCAGGTCCTGGAGAATGCATTTCCCTCCTCTCAGAG
CCGCCCCAGGGTTCCTGTGTGTAGACTGATACCAG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGGACAGGGAAGAGGGAGTGAGTAGGTTGG
TGAGCAGGTGGAGGGGCCATGGGGTAGCNCNNTNNNTTTTTTTCTTCTTN
TCTCTCTTTTTTCACCTTTCCCTTATTCTTCCCTTTCCTCCCATTTAACT
CATTTTTTTACATTCCCATTCTCTCCCTTTCCTCCACTATCCACTTTACC
TCTTTTTTCTTACTTTCCCCCTCTCTTTTTTAGCCCCTCTTCCCCTCGTT
GTTCCTTTTTCGTTTTTTCCCACCCCTCTTTTTTTTCCCACGACTATATT
AACATTACCCACAAAAGAAAATTTTTAAATGAATTCCCCCAAACAAACGC
CCCGCTTTTAATTTTTTTTTTTTTGTTTTTATTCGTCCCCCCCTTTTTAT
CAAAATAAATAAATAATAATACGTTGTTAGGGCGTGGAAATCCTCACTTC
TCTTCTTCTATCCCTCCTCCATTACTATATATATTCTTTATTACCACCTC
ACTTTTTTGTCCTTCTTTTAAATTAACCATAAAAAAATATTTATATAATA
TCACCTATTCTATTCCTATTTTTTATTCTCTTCTTATTTATTCTACGCAT
ATCTACTTTTTTTCACACCTTATCCCACATCTTTTTTTTCATCCTCTACC
TCCTCTATTACGTCTTCTACCATTTTTCTCCACTTATTTTTTCTTTTTCG
CACTCACTTTATTCTATTTTTTTCACCGCACACTATATTCTTCTTTTCAT
TTCTATTTTTCTATTTCTCTTAACCTTCCTCTACATTCTTTATATCTACT
ACTTATACATCATTATTCTTTCTTTTATTTATATCCTTTCACACAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_p05.b1 MSMg01no273_p05.b1 CHROMAT_FILE:
MSMg01no273_p05.b1 PHD_FILE: MSMg01no273_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:25 2005
         (320 letters)



>mm_chr12_34003118_34003837
          Length = 720

 Score =  571 bits (295), Expect = e-167
 Identities = 310/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaggatagcccgggaaactctttctcagtacctgctcccccacccccaaccccc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaattccaggatagccagggaaactctttctcagtacctgctcccccacccccaaccccc 368

                                                                       
Query: 65  tccaaatgttaggaccagaatggcttgggaggagtttgctccttaaagagataggacttt 124
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tccaaatattaggatcagaatggcttgggaggagtttgctccttaaagagataggacttt 308

                                                                       
Query: 125 acctcaccttttcaccactcctacacactgccagcgaccacaggctacctcagccactaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acctcaccttttcaccactcctacacactgccagcgaccacaggctacctcagccactaa 248

                                                                       
Query: 185 gttatttgacacagactcatccagggtgagtgggctacaccgctcagttcagttcagttc 244
           ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 247 gttatttgacatagactcatccagagtgagtgggctacaccgctcagttcagttcagttc 188

                                                                       
Query: 245 agttctgttctgtcaggtcactccccagcatccttaggtttctggcgttttctcagccat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 agttctgttctgtcaggtcactccccagcatccttaggtttctggcgttttctcagccat 128

                          
Query: 305 ctggtcattccacac 319
           |||||||||||||||
Sbjct: 127 ctggtcattccacac 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)