BAC Information

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BAC

Clone NameMSMg01-275D08
Chromosome12 (Build37)
Map Location 28,332,255 - 28,332,542
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009
Downstream geneLOC669327, 1110015M06Rik, Allc, Colec11, Rps7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-275D08.T7 (MSMg01no275_d08.b1)MSMg01-275D08.TJ (MSMg01no275_d08.g1)
ACCAG413726AG413727
length755761
length of high quality
(start - end)
290 (67 - 356)287 (73 - 359)
definitionCHROMAT_FILE: MSMg01no275_d08.b1 PHD_FILE: MSMg01no275_d08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:54 2005CHROMAT_FILE: MSMg01no275_d08.g1 PHD_FILE: MSMg01no275_d08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:14:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAGCCCTTACCAAGAACAGACAGCAGCACTGGCTCAAGAGCTGTGTACA
CACACTTGTACAATGGCCCCTATGATCGCTAAACAGGAAGTGTAGCTCTG
TAGTGCTTGACAACTGACAAGTGATGCTGGATTTACAGAGATTTAAATTG
TACTTACATTTCAACTCCATCTCAGTTACTTTTTTTAAAATTAGGTATTT
TCCTCATTTACATTTCCAATGCTATCCCAAAAGTCCCTCAGACCGTCCCC
CCTACTCCCCTACCCACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTG
TACTTGGTANATACCCCCCGCCCCCCCAATGGGCCTCTCTTTGCAGTGAT
GGCCGACTAGGCCATCTAAAGAACATATGCAGCTAGAGTCAAGAGCTCCG
GGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCC
TTTAGCTCCTTGGGTATTTTCTCTAACTCCTCCATTGGGGGCCCTGTGAT
CCATCCAATAGCTGACTGTGAGCATCCACTTATGTGTTTGCTAGGCCCCG
GCGTAGTCTCACTAGAAACAGCTATATCAGGGTCCTATCAGCAAAATCTT
GCTAGTGTATGCAATGGTGTCAGTGTTTGGAGGCTGATTATGGGATGGAT
CCCTGGATATGGCAGTCTCTAGATGGTAAATCCTTTTTGTCTCAGCTCCT
AACTT
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAGACTTTTACCATTAA
AGCTTATTGGATTTTATCAAATGCTTTCTCAGCATATAACGAGATGATCA
TATTTTTTCTCTTTGAATTTATTTATATAGTGGATTACGTTGATTGATTT
TAGTATACTGAACCATTCCTGCATCTCTGGGAAGAAGCCTACTTGATCGT
GATGGATGATCGTTTTGATGGGTTCTTGGATTCTGTTTGCAAGAACTTTA
TTGAGTATTTTCACACTGATATTAAAAAGGGAAATTCGTCTGAAGTTCTT
TTTCTTTGTTATGTCCCCGCCCGCCCCAGGTATCAGGGTAATCATGGCTT
CATAAAATGAATTGGGTAGAGAAACTTCTGTTTCTATTTTGTAAAATAGT
TTGGGGAGTATTGGAATTAGGTCTTCTTTGAAGGTTTGATAGAATTCTGC
ACTAAACACATCTGGTCCTGGGCTTTTTGATTGGGAGACTATTAATGACT
GTTTCTATTTCTTTAGGGAATATGGGACTGTTTAGATCATTTATCTTATC
CTGATTTAATTTTGGCACCTGGTATCTGTCTTAAACATTATGCATTTCAG
CCAGGGCTTTACCGTTTTTGTTGAGGATAGCCTTTTCATAGCAGGATCTA
ATGATCTTGATACTTTTTTTTTATTTCCCCCGTTTTCTTTTGCTAAGTTC
TCCCTCTTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no275_d08.b1 MSMg01no275_d08.b1 CHROMAT_FILE:
MSMg01no275_d08.b1 PHD_FILE: MSMg01no275_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:14:54 2005
         (290 letters)



>mm_chr12_28332055_28332744
          Length = 690

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagacagcagcactggctcaagagctgtgtacacacacttgtacaatggcccctatgat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 acagacagcagcactggctcaagagctgtgtacacacacttgtacaatggccactatgat 260

                                                                       
Query: 61  cgctaaacaggaagtgtagctctgtagtgcttgacaactgacaagtgatgctggatttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgctaaacaggaagtgtagctctgtagtgcttgacaactgacaagtgatgctggatttac 320

                                                                       
Query: 121 agagatttaaattgtacttacatttcaactccatctcagttactttttttaaaattaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagatttaaattgtacttacatttcaactccatctcagttactttttttaaaattaggt 380

                                                                       
Query: 181 attttcctcatttacatttccaatgctatcccaaaagtccctcagaccgtcccccctact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttcctcatttacatttccaatgctatcccaaaagtccctcagaccgtcccccctact 440

                                                           
Query: 241 cccctacccacccactcccactttttggccctggcgttcccctgtact 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctacccacccactcccactttttggccctggcgttcccctgtact 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)