Query= MSMg01no278_h21.b1 MSMg01no278_h21.b1 CHROMAT_FILE:
MSMg01no278_h21.b1 PHD_FILE: MSMg01no278_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:50 2005
(279 letters)
>mm_chr12_52160336_52161014
Length = 679
Score = 493 bits (255), Expect = e-144
Identities = 273/279 (97%)
Strand = Plus / Minus
Query: 1 gttttcataaaaactgggagtttatttctcatagttccggaagctggatgtgtttaaaga 60
|||||| || ||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gttttcgtagaaactggaaatttatttctcatagttccggaagctggatgtgtttaaaga 467
Query: 61 agtgactgcctctgagcatggccacgtcacatctgatttctctggtttctaggttgcaga 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 466 agtgactgcctctgagcatggccacatcacatctgatttctctggtttctaggttgcaga 407
Query: 121 ccttgtgtagtgaaagtcctcttttcttcttgtatctctggatacattttacaggattct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ccttgtgtagtgaaagtcctcttttcttcttgtatctctggatacattttacaggattct 347
Query: 181 ataagttatcaatatcatacctcagccaactccagggttctagagatccttgtttctgtc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 346 ataagttatcaatatcatacctcagtcaactccagggttctagagatccttgtttctgtc 287
Query: 241 tatagaaagtctgcctcctctgtaaactgagacccttaa 279
|||||||||||||||||||||||||||||||||||||||
Sbjct: 286 tatagaaagtctgcctcctctgtaaactgagacccttaa 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no278_h21.g1 MSMg01no278_h21.g1 CHROMAT_FILE:
MSMg01no278_h21.g1 PHD_FILE: MSMg01no278_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:50 2005
(285 letters)
>mm_chr12_51969361_51970045
Length = 685
Score = 497 bits (257), Expect = e-145
Identities = 277/285 (97%), Gaps = 4/285 (1%)
Strand = Plus / Plus
Query: 1 catctttgctagtgactcacatcagctgcttccattttttttttca--ccaaatgaaagt 58
|||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct: 201 catctttgctagtgactcacatcagctgcttccattttttttttcaggc--aatgggagt 258
Query: 59 ggctgttcatagcacaccttgcatgaagtttagagtgcccttggaagatctctgaggtct 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggctgttcatagcacaccttgcatgaagtttagagtgcccttggaagatctctgaggtct 318
Query: 119 tttttaacctttttaatctcgagggttccatcctctcttttgaaggggttggcttcctga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttttaacctttttaatctcgagggttccatcctctcttttgaaggggttggcttcctga 378
Query: 179 ataaatgcagaggagcagagccatgaacttacccaaacaagcacatttccctaaaaggca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ataaatgcagaggagcagagccatgaacttacccaaacaagcacatttccctaaaaggca 438
Query: 239 ggctgaacattctcccaccaccaccgtcatcatcatcttcttcat 283
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 439 ggctgaacagactcccaccaccaccgtcatcatcatcttcttcat 483
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
