MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-279F10
Chromosome	12 (Build37)
Map Location	82,537,268 - 82,537,508
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4
Downstream gene	1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx, Sipa1l1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Wdr22 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320808 MGI:2444785
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Exdl2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97827 MGI:1922485
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310002D06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69522 MGI:1916772
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Galntl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108760 MGI:1917754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041715 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041715
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Erh (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13877 MGI:108089
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc39a9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328133 MGI:1914820
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 47 ESTs, 2 Proteins

name	3830431G21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217682 MGI:3036228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs, 2 Proteins

name	Gm1568 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:380768 MGI:2686414
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4933426M11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217684 MGI:2444661
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sfrs5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20384 MGI:98287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Slc10a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20493 MGI:97379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Smoc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:64075 MGI:1929878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc8a3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:110893 MGI:107976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042143 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100042148 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042148
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 mRNAs, 1815 ESTs, 24 Proteins pseudo : _no_value

name	EG214321 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:214321 MGI:3646380
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hspe1-ps2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93749 MGI:1935162
definition	gene_synonym : Cpn10-rs3 note : heat shock protein 1 (chaperonin 10), pseudogene 2 pseudo : _no_value

name	Adam4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11498 MGI:104731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810020G14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66272 MGI:1913522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Synj2bp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24071 MGI:1344347
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adam21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56622 MGI:1861229
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Med6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69792 MGI:1917042
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ttc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69480 MGI:1916730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041821 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041821
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Map3k9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338372 MGI:2449952
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcnx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54604 MGI:1891924
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sipa1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217692 MGI:2443679
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr22 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542047 GeneID:320808 MGI:2444785
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 22 transcript_id : NM_177267.3

name	Exdl2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527013 GeneID:97827 MGI:1922485
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : exonuclease 3''-5'' domain-like 2 transcript_id : NM_133798.1

name	2310002D06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392983 GeneID:69522 MGI:1916772
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : RIKEN cDNA 2310002D06 gene transcript_id : XM_899399.2

name	Galntl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487252 GeneID:108760 MGI:1917754
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 transcript_id : NM_001081421.1

name	Erh (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892169 GeneID:13877 MGI:108089
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : enhancer of rudimentary homolog (Drosophila) transcript_id : NM_007951.2

name	Slc39a9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392986 GeneID:328133 MGI:1914820
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 47 ESTs, 2 Proteins product : solute carrier family 39 (zinc transporter), member 9, transcript variant 2 transcript_id : XM_891220.2

name	3830431G21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263342 GeneID:217682 MGI:3036228
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs, 2 Proteins product : RIKEN cDNA 3830431G21 gene, transcript variant 1 transcript_id : XM_126991.8

name	Gm1568 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56606028 GeneID:380768 MGI:2686414
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1568, (NCBI) transcript_id : NM_001008423.1

name	4933426M11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31581563 GeneID:217684 MGI:2444661
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933426M11 gene transcript_id : NM_178682.3

name	Sfrs5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226246 GeneID:20384 MGI:98287
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor, arginine/serine-rich 5 (SRp40, HRS) transcript_id : NM_001079695.1

name	Sfrs5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226242 GeneID:20384 MGI:98287
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor, arginine/serine-rich 5 (SRp40, HRS) transcript_id : NM_001079694.1

name	Sfrs5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119226244 GeneID:20384 MGI:98287
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor, arginine/serine-rich 5 (SRp40, HRS) transcript_id : NM_009159.2

name	Slc10a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6755527 GeneID:20493 MGI:97379
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 10 (sodium/bile acid cotransporter family), member 1 transcript_id : NM_011387.1

name	Smoc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11612484 GeneID:64075 MGI:1929878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SPARC related modular calcium binding 1 transcript_id : NM_022316.1

name	Slc8a3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142363097 GeneID:110893 MGI:107976
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 8 (sodium/calcium exchanger), member 3 transcript_id : NM_080440.2

name	LOC100042143 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263343 GeneID:100042143
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042143 transcript_id : XM_001477943.1

name	EG214321 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111955130 GeneID:214321 MGI:3646380
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG214321 transcript_id : NM_001038995.2

name	Adam4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27923589 GeneID:11498 MGI:104731
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 4 transcript_id : NM_009620.1

name	1810020G14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803516 GeneID:66272 MGI:1913522
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810020G14 gene transcript_id : NM_025461.3

name	Synj2bp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802342 GeneID:24071 MGI:1344347
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptojanin 2 binding protein transcript_id : NM_025292.3

name	Adam21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803337 GeneID:56622 MGI:1861229
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : a disintegrin and metallopeptidase domain 21 transcript_id : NM_020330.4

name	Med6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754026 GeneID:69792 MGI:1917042
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mediator of RNA polymerase II transcription, subunit 6 homolog (yeast) transcript_id : NM_027213.2

name	Ttc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142380851 GeneID:69480 MGI:1916730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tetratricopeptide repeat domain 9 transcript_id : NM_001033149.2

name	Map3k9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130417 GeneID:338372 MGI:2449952
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitogen-activated protein kinase kinase kinase 9 transcript_id : NM_177395.4

name	Pcnx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:93004082 GeneID:54604 MGI:1891924
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pecanex homolog (Drosophila) transcript_id : NM_018814.3

name	Sipa1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27369827 GeneID:217692 MGI:2443679
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : signal-induced proliferation-associated 1 like 1 transcript_id : NM_172579.1

name	Wdr22 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56090231 CCDS:CCDS26013.1 GeneID:320808 MGI:2444785
definition	codon_start : 1 product : WD repeat domain 22 protein_id : NP_796241.3

name	Exdl2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527014 GeneID:97827 MGI:1922485
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0004527 - exonuclease activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 product : exonuclease 3''-5'' domain-like 2 protein_id : NP_598559.1

name	2310002D06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82942866 GeneID:69522 MGI:1916772
definition	codon_start : 1 product : hypothetical protein LOC69522 protein_id : XP_904492.1

name	Galntl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487253 GeneID:108760 MGI:1917754
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0004653 - polypeptide N-acetylgalactosaminyltransferase activity [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 1 protein_id : NP_001074890.1

name	Erh (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679685 GeneID:13877 MGI:108089
definition	GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence ISS]; GO:0006213 - pyrimidine nucleoside metabolism [Evidence ISS]; GO:0000074 - regulation of progression through cell cycle [Evidence ISS] codon_start : 1 note : preimplantation protein 1 product : enhancer of rudimentary homolog protein_id : NP_031977.1

name	Slc39a9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392987 GeneID:328133 MGI:1914820
definition	codon_start : 1 product : solute carrier family 39 (zinc transporter), member 9 isoform 2 protein_id : XP_896313.2

name	3830431G21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28521618 GeneID:217682 MGI:3036228
definition	codon_start : 1 product : similar to hCG21972, isoform 1 protein_id : XP_126991.2

name	Gm1568 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56606029 CCDS:CCDS26015.1 GeneID:380768 MGI:2686414
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC380768 protein_id : NP_001008423.1

name	4933426M11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520071 CCDS:CCDS26016.1 GeneID:217684 MGI:2444661
definition	codon_start : 1 product : hypothetical protein LOC217684 protein_id : NP_848797.1

name	Sfrs5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226243 GeneID:20384 MGI:98287
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0006376 - mRNA splice site selection [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : splicing factor, arginine/serine-rich 5 protein_id : NP_001073162.1

name	Sfrs5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226247 GeneID:20384 MGI:98287
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0006376 - mRNA splice site selection [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : splicing factor, arginine/serine-rich 5 protein_id : NP_001073163.1

name	Sfrs5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119226245 GeneID:20384 MGI:98287
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0006376 - mRNA splice site selection [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : splicing factor, arginine/serine-rich 5 protein_id : NP_033185.2

name	Slc10a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755528 GeneID:20493 MGI:97379
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0008508 - bile acid:sodium symporter activity [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0015711 - organic anion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : bile acid cotransporting polypeptide; sodium-taurocholate cotransporting polypeptide product : solute carrier family 10 (sodium/bile acid cotransporter family), member 1 protein_id : NP_035517.1

name	Smoc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11612485 CCDS:CCDS26017.1 GeneID:64075 MGI:1929878
definition	GO_component : GO:0005604 - basement membrane [Evidence IEA]; GO:0005575 - cellular_component [Evidence ND]; GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 exception : mismatches in translation note : SPARC-related protein; secreted modular calcium binding protein 1; SPARC related modular calcium binding 1 product : secreted modular calcium-binding protein 1 protein_id : NP_071711.1

name	Slc8a3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17978254 GeneID:110893 MGI:107976
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005432 - calcium:sodium antiporter activity [Evidence IEA]; GO:0005386 - carrier activity [Evidence IEA] GO_process : GO:0006816 - calcium ion transport [Evidence IEA]; GO:0007154 - cell communication [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation product : solute carrier family 8 (sodium/calcium exchanger), member 3 protein_id : NP_536688.1

name	LOC100042143 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263344 GeneID:100042143
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477993.1

name	EG214321 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111955131 CCDS:CCDS26018.1 GeneID:214321 MGI:3646380
definition	codon_start : 1 product : a disintegrin and metalloprotease domain 4b protein_id : NP_001034084.2

name	Adam4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27923590 CCDS:CCDS26019.1 GeneID:11498 MGI:104731
definition	codon_start : 1 note : a disintegrin and metalloprotease domain (ADAM) 4 product : a disintegrin and metalloprotease domain 4 protein_id : NP_033750.1

name	1810020G14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384872 CCDS:CCDS26020.1 GeneID:66272 MGI:1913522
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC66272 protein_id : NP_079737.1

name	Synj2bp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384642 CCDS:CCDS26021.1 GeneID:24071 MGI:1344347
definition	GO_component : GO:0005741 - mitochondrial outer membrane [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007028 - cytoplasm organization and biogenesis [Evidence ISS]; GO:0006605 - protein targeting [Evidence IDA]; GO:0030100 - regulation of endocytosis [Evidence IDA]; GO:0007266 - Rho protein signal transduction [Evidence IDA] codon_start : 1 note : outer membrane protein 25; activin receptor interacting protein 2; activin receptor innteracting protein 2; activin receptor-interacting protein 2a; activin receptor-interacting protein 4 product : synaptojanin 2 binding protein protein_id : NP_079568.1

name	Adam21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9966766 CCDS:CCDS26022.1 GeneID:56622 MGI:1861229
definition	GO_component : GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : a disintegrin and metalloprotease domain (ADAM) 21 product : a disintegrin and metalloprotease domain 21 protein_id : NP_065063.1

name	Med6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754027 CCDS:CCDS26023.1 GeneID:69792 MGI:1917042
definition	GO_component : GO:0000119 - mediator complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003713 - transcription coactivator activity [Evidence ISS] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS] codon_start : 1 product : mediator of RNA polymerase II transcription, subunit 6 homolog protein_id : NP_081489.2

name	Ttc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701652 CCDS:CCDS26024.1 GeneID:69480 MGI:1916730
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : tetratricopeptide repeat domain 9 protein_id : NP_001028321.1

name	Map3k9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52421792 GeneID:338372 MGI:2449952
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : mitogen-activated protein kinase kinase kinase 9 protein_id : NP_796369.2

name	Pcnx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52632387 CCDS:CCDS26025.1 GeneID:54604 MGI:1891924
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : pecanex 1 product : pecanex homolog protein_id : NP_061284.2

name	Sipa1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369828 CCDS:CCDS26026.1 GeneID:217692 MGI:2443679
definition	GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : signal-induced proliferation-associated 1 like 1 protein_id : NP_766167.1

name	LOC100041715 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041715
definition	number : 1 pseudo : _no_value

name	LOC100041821 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041821
definition	number : 1 pseudo : _no_value

name	LOC100042148 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263345 GeneID:100042148
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 mRNAs, 1815 ESTs, 24 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_033471.1

clone name	MSMg01-322C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392G16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351P13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-106M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-324H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333G23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-075L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404N17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279F10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-333B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-519K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-149K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-233P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155N15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156E15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007B19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153K01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009N23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-341I22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-211G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-177M21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058K14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047J08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233P15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034O16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231C08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034F22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-213E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313M12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086E11
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-279F10.T7 (MSMg01no279_f10.b1)	MSMg01-279F10.TJ (MSMg01no279_f10.g1)
ACC	AG416728	AG416729
length	771	769
length of high quality (start - end)	319 (46 - 364)	287 (77 - 363)
definition	CHROMAT_FILE: MSMg01no279_f10.b1 PHD_FILE: MSMg01no279_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:54 2005	CHROMAT_FILE: MSMg01no279_f10.g1 PHD_FILE: MSMg01no279_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:54 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCTCTGAAGACCCTGCATCTCAGAACATACCCATCACAGCCATGCAA AATAGTGAACCATCTCTAGAAAACGTACTTGCTGTCATAGCCTTTTCTAG AAGGCTTCTGAAAGACCTGAAAGGAATTGGACAATGGGAAATCATGATAG GGATATGTCATATGGATGTTGTTCAATAAAAATCCAAAAGAAGTAAACCA ACTGGACGTGATTGATGGAATGTTAAGACTACAGAGATGTCACGAAAAGA AAAAAAAATCAAGGTGTAAAACAGTTGTTTTTTTTTTTTTTTTTTTTTTT TTATCAAATTTAAGCTTTTGATAACCCCCCCTCCACACACTATATACTGC TTCCTGTTCCCATTTGCACCTGAGCGTTGACCCTGGGCCACAAGCCCCAA CACCCCAATCCCACCCAGGAAGACTTTGTCCTCCAGTACTGCTGACACAC TCAGGCTCACATGTAAGACAAGAAGTACCACCCCAATACCTGACCCAGGT GGGTCATGCCTGAAACCCAGTGGACCCAGGAACCACAGTGCAGCTGGGAA TAGGATCCCTAGGGTTTCCATCCATGCCTGGGAGCTGAGACTATGCCACA GACCTCTGCACCCCAATACAGCCCAGAAAAAACATGTCACGGGCTCACAG TAGGGCAAGCTACCGTCAGAGAAACTGCCAGGCCCACTACACCATAGATG ACCTGATGTTGATAGGCAATA	CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXCCACCTGGCTTAGCTCTTGGTCTA AGTGACTCTGGTGGGGGCTCTGACGCAAGTGCGGACAGCTGCATTTTCAG AGTAGGCAGCTGCATGTGGGGTATCTCTACTGGAATTTTCTTTAAGAGAC CCTTCCCAGGCACCTTTGCCAAGCCCTTGTCACTGAGGGTTTTCTGGAGG CCATTTTATTCATCCTGACTCAGTGTCTGTCCATTCCTCGTCCTTTCTGT TCCTTCCTGCTGCTCTATAAGTCAATAGACACATTAGTAGCCTTTATTTA GGGCCCCTTGGCAGTTGGTATTTTCCNANACCTGCCCTCCATTAGACTCT GCCATTCTGGAAATGGAACCCTGGGGAGACAGAAACAACCTTTTCTGTCC CCTGCCTGCACTGCTGCAGAAAATACACTGAAGAGATTTGACAGTTACTT TCCATTTGACTTGTCCTAATTGACCTCTTCATCACCTGGCAGCTTGCCTG CCACGTGTCTGTGTTTCCTCTCTTATAAGTAGGAATAACAATATTTCACT TGAACTTGTTCATTGTCTGCTTGTTGAATTAACAAGATGTCCTGATGGGA ACAGCTGGAAGATGGTATATTTTATTTGGGAACAAGAATTCTAGTTCATC AAGGAGCAGAAGGTTATGGTAAACACCTGTGTTGAATGTAGTGTGTTTTA TGTTAATATTTTTGTTGGT
quality values	Open. Hide. 8 8 8 8 10 10 16 30 41 41 33 32 32 28 28 37 37 33 33 33 37 39 41 48 48 35 35 30 32 32 36 57 43 43 43 43 43 43 57 57 42 42 28 30 30 42 43 68 68 42 42 42 42 50 50 68 68 68 54 50 48 48 48 47 48 48 46 44 57 57 57 51 51 50 47 47 47 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 50 50 51 68 68 68 68 68 68 68 68 68 68 68 51 68 68 68 68 68 68 68 68 68 68 68 68 59 57 52 52 52 52 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 57 57 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 62 62 62 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 59 59 59 59 59 57 57 57 59 59 68 59 59 59 59 57 57 57 68 68 68 68 68 68 59 59 59 59 68 68 68 59 59 59 59 59 68 68 59 59 59 68 59 68 68 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 40 40 40 43 44 48 59 59 41 32 15 13 10 10 10 10 11 12 12 12 21 21 26 19 19 22 16 23 11 9 9 9 9 10 11 11 12 12 30 30 40 40 40 47 47 48 48 48 48 59 47 48 48 48 48 48 43 44 43 43 43 43 41 34 20 20 20 34 34 47 41 41 30 41 41 39 42 37 37 37 37 41 24 20 20 23 25 28 30 32 42 42 47 57 57 44 43 43 37 43 43 46 47 42 39 39 39 59 59 57 57 57 59 44 43 43 36 36 23 23 23 44 32 44 41 28 28 41 41 30 28 32 32 43 39 39 39 39 39 39 36 40 36 30 30 37 37 37 47 43 43 39 43 32 32 35 35 35 37 28 30 25 27 20 17 13 18 18 32 30 37 30 30 30 37 37 48 59 57 47 47 39 37 37 40 43 47 41 37 37 30 25 22 23 22 24 22 28 28 18 19 21 21 24 30 35 35 39 39 39 35 37 35 31 31 34 28 25 25 19 19 24 20 18 18 18 18 18 17 19 19 11 11 11 21 21 30 28 33 28 28 25 23 14 12 12 17 18 18 28 28 28 37 32 29 29 32 37 37 27 25 25 27 30 37 37 30 30 24 26 19 19 22 30 24 29 28 19 18 19 24 25 25 21 23 11 11 11 9 8 8 8 10 9 11 16 15 13 15 11 12 12 24 26 20 18 10 13 13 13 12 10 8 8 8 12 13 16 28 24 14 19 10 10 10 13 13 22 27 19 13 12 10 10 10 8 11 12 20 18 18 8 10 8 8 8 10 12 14 14 13 12 17 24 25 22 22 15 12 10 7 6 8 10 17 11 11 9 9 9 10 13 15 19 19 12 15 14 16 9 8 8 8 12 10 10 8 8 8 8 10 10 13 11 11 11 19 19 28 21 20 19 15 12 10 8 8 8 11 10 10 10 8 8 8 8 8 8 8	Open. Hide. 9 9 7 8 8 8 8 8 8 19 25 37 37 37 47 41 41 41 39 39 44 44 47 47 47 47 48 48 48 53 48 48 39 39 35 39 39 39 37 36 36 36 42 42 53 48 57 57 48 48 50 48 48 50 54 54 54 54 57 57 57 41 41 50 50 50 43 57 57 57 48 48 48 48 50 50 50 50 50 50 51 68 68 68 68 68 57 59 57 57 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 57 57 52 43 43 41 39 43 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 54 54 54 54 59 59 68 68 68 68 68 57 57 57 59 59 59 59 59 54 57 57 68 68 57 57 57 57 57 57 57 68 57 59 57 57 57 57 57 68 57 57 59 59 59 68 68 68 68 57 57 57 57 57 57 59 59 59 59 59 59 59 57 57 59 59 59 54 59 54 57 57 68 68 68 68 68 68 59 59 59 59 59 68 68 68 68 68 68 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 41 32 32 21 21 13 12 12 12 18 19 34 36 59 59 47 48 48 48 48 50 53 53 57 57 59 57 50 50 50 48 48 48 59 50 50 47 47 37 27 20 11 9 9 9 9 7 7 7 7 8 8 10 13 14 3 0 3 0 3 6 6 7 6 10 9 8 10 10 25 25 34 34 28 28 28 41 41 59 59 57 23 23 9 9 9 27 27 59 59 50 50 50 47 39 39 32 32 32 37 37 59 40 40 25 25 12 15 11 8 8 8 8 8 8 8 8 8 8 13 15 25 30 36 41 37 28 25 25 28 28 28 32 23 29 30 37 43 43 57 57 57 43 59 36 33 29 25 25 28 19 19 15 16 14 19 23 23 12 12 12 12 23 28 43 43 59 57 54 42 42 39 39 36 39 43 46 43 47 47 31 31 20 20 18 29 32 36 37 33 41 41 39 32 28 31 21 10 13 17 18 20 33 37 37 39 48 25 23 10 10 10 20 23 39 47 43 27 19 8 8 10 22 17 23 13 13 13 25 26 28 28 15 15 11 12 11 16 12 25 29 30 16 15 10 12 10 11 21 28 29 36 36 21 30 19 22 22 24 28 32 28 28 19 19 25 31 29 30 24 19 15 15 15 9 10 10 10 11 23 27 26 21 21 20 20 18 27 21 21 13 9 10 11 11 10 9 15 11 16 22 20 14 12 15 12 13 8 8 8 10 12 9 9 9 12 9 10 9 13 11 18 18 15 10 10 9 9 10 10 15 12 12 10 12 9 8 8 9 8 8 9 10 8 8 6 6 8 6 9 11 23 24 30 25 28 21 15 14 9 9 9 9 9 9 13 13 14 13 25 12 9 9 14 14 9 9 9 9 13 10 10 9 9 9 9 7 7 8 8 12 9 9 9 11 11 19 8 9 13 8 10 10 15 14 14 11 15 8 8 8 8 10 8 8 8 8 8 8 8 8 6 6 8 8 9 9 10 8 8 8 8 8 10 9 9 9 10 10 13 10 10 10 13 13 13 11 11 11

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no279_f10.b1 MSMg01no279_f10.b1 CHROMAT_FILE:
MSMg01no279_f10.b1 PHD_FILE: MSMg01no279_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:54 2005
         (319 letters)



>mm_chr12_82537064_82537782
          Length = 719

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgaagaccctgcatctcagaacatacccatcacagccatgcaaaatagtgaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaagaccctgcatctcagaacatacccatcacagccatgcaaaatagtgaa 264

                                                                       
Query: 65  ccatctctagaaaacgtacttgctgtcatagccttttctagaaggcttctgaaagacctg 124
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ccatctctagaaaacgtacttgctgtcacagccttttctagaaggcttctgaaagacctg 324

                                                                       
Query: 125 aaaggaattggacaatgggaaatcatgatagggatatgtcatatggatgttgttcaataa 184
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 325 aaaggaattggacaatgggaaatcatgatagggatatgtcatatggattttgttcaataa 384

                                                                       
Query: 185 aaatccaaaagaagtaaaccaactggacgtgattgatggaatgttaagactacagagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatccaaaagaagtaaaccaactggacgtgattgatggaatgttaagactacagagatg 444

            
Query: 245 t 245
           |
Sbjct: 445 t 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information