Query= MSMg01no279_i24.b1 MSMg01no279_i24.b1 CHROMAT_FILE:
MSMg01no279_i24.b1 PHD_FILE: MSMg01no279_i24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:11 2005
(243 letters)
>mm_chr12_85477172_85477816
Length = 645
Score = 433 bits (224), Expect = e-126
Identities = 236/240 (98%), Gaps = 2/240 (0%)
Strand = Plus / Plus
Query: 5 gaattctgtcccccaagccctgagagtgtaaccctgaagtttaccaacgtgggaagtatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtcccccaagccctgagagtgtaaccctgaagtttaccaacgtgggaagtatc 264
Query: 65 tgtgcttgcagctgagttcctgaagctggccgagctgccgtgcctggaggacctggtgtt 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtacttgcagctgagttcctgaagctggccgagctgccgtgcctggaggacctggtgtt 324
Query: 125 cgtcggtaatcccctggaggagaaacactctgccgagggcaactggatcgatgaagcaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgtcggtaatcccctggaggagaaacactctgccgagggcaactggatcgatgaagcaac 384
Query: 185 caagagagtacccaagctgaaaaagctggatggtgagtgtgacgg-ggggggg-gggggg 242
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 385 caagagagtgcccaagctgaaaaagctggatggtgagtgtgacggtgggggggagggggg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 645
Length adjustment: 9
Effective length of query: 234
Effective length of database: 636
Effective search space: 148824
Effective search space used: 148824
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no279_i24.g1 MSMg01no279_i24.g1 CHROMAT_FILE:
MSMg01no279_i24.g1 PHD_FILE: MSMg01no279_i24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:11 2005
(287 letters)
>mm_chr12_85632964_85633656
Length = 693
Score = 522 bits (270), Expect = e-153
Identities = 284/292 (97%), Gaps = 6/292 (2%)
Strand = Plus / Minus
Query: 1 actctgtagaccaggctggcttcaaacttgagattcaaaatttactagccttaatttgct 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 528 actctgtagaccaggctggcttcaaacttgagattcaaaatttactagtcttaatttgct 469
Query: 61 tttctaccttagtttgctaccctgacatcatg------ttggtttttattcatccatgtg 114
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 468 tttctaccttagtttgctaccctgacatcatgttggttttggtttttattcgtccatgtg 409
Query: 115 tgttataattacccgagaccacaactgttcatttaccacagaatcatacataccaggtcg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 tgttataattacccgagaccacaactgttcatttaccacagaatcatacataccaggtcg 349
Query: 175 ggaattcaataccactctttgtatgatcatcacttgaattctgcaatggtttcacaagac 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ggaattcaataccactctttgtatgatcatcacttgaattctgcaatggtttcacaagac 289
Query: 235 ttctatataaaataattcctgtaattagaaaaaaaatcattagaaagatata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttctatataaaataattcctgtaattagaaaaaaaatcattagaaagatata 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 693
Length adjustment: 9
Effective length of query: 278
Effective length of database: 684
Effective search space: 190152
Effective search space used: 190152
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
