BAC Information

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BAC

Clone NameMSMg01-280L14
Chromosome12 (Build37)
Map Location 68,108,182 - 68,108,415
singlet/doubletsinglet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280L14.T7 (MSMg01no280_l14.b1)MSMg01-280L14.TJ (MSMg01no280_l14.g1)
ACCAG417744AG417745
length757831
length of high quality
(start - end)
234 (128 - 361)107 (77 - 183)
definitionCHROMAT_FILE: MSMg01no280_l14.b1 PHD_FILE: MSMg01no280_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:38 2005CHROMAT_FILE: MSMg01no280_l14.g1 PHD_FILE: MSMg01no280_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGCTTTGTGTTTCTACAAGACACTCCTAATTAAAAAGCCAAGG
ACAGCAATGAGCTGCCTGTATCTCCCAGTATGGCTACTGTTGTTTGTAAG
AATTCTGAGGCTAATGCTATCAAAATGTTTTTGATGAAAAGCTATTTACT
GTGGTTATGATTATTTTATAATTACCCAAATTAATGCTCTCTCTCAAACA
CTATTTTCTAAGACTTCATATGCTCTCTTTACATCCTGCCCTCTTTCCTT
TGAAAAAGCAATTGTATCTATAATCATTGCTTGCTGCATGCCTTTCTCAT
GTGCCCTTGAGGTCTTTTCTCTCACAACCCCCCCCCCTAAAGTTATTCCA
TTGCATTTCTGTGTCTTAATATTGCCACATGTCTAGATATATATTGTGAT
CTAAAAATAAGAAAAACATAAATGAAGTTAAATGAATATTTTGGTCCTGA
TCTGCAACCAATATCTAAAATTGTCACTCATCTTAAAACCTATTTTATCC
ATTTACACCATTTATGCAACATATTGAAATAAAAATGATTATTTCAACTT
ATGCTTTCAAAAATATTTTCATAAAAAATTCATAATTAATGTTTCATATG
TTTAGTTGTGTTGTATATATTTGTGATCTCATGATGGAGAGGACAGTTTT
CCAAAGTGTTTGCACTTATAATTTTTTCTCTCAGGCTTTATATTCAATAT
AAGCATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTTACCAAGGAGAGGATATAC
CTAGTCCTGTAGAGACTTGGTTTCTACGGGAAGGGGGATGCTGGGGGGTT
GAGGTGGGGGTGGCTGGGTAGGTGAGAGGTGTGNTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTCNTTTTT
TTTTTTTTTTTTTTTTTTGTTTTCTCTTTATCTATTTCTTTTTTTTGATT
TTAATTTTAATTTCGATTAATTTTTTTTTTTTTTTTTTTATAAATTTTTA
GTAAGAAGATATATTTTTTGATTAAATTTTCGAAACAGAGCCCTTTTTTT
TTTTTTTTTGTTTTTTTTGTTTTGTTTTTGTTTTAATAAAAAAAAAAAAA
AAATTGTGGGGGGGTGGTTTTTTTTATTTTTATTTTTGTTTTTTTTTTTT
TTTCTTTTTTTTTATTTATTAAAATTATATTTTTATTATTGATATTTTTT
TATACTATTTTTTTTATTATTTTTTTTTCTATTTTATTTTTTTTCTATTA
TATTTTTTTTTTTGTTATTTTTTATTATTTATTTTTTATTTATTTTTTTT
TTTTATTTATTTTTTTCTATTCTTTTAGTTAAATGTTTAATTTTTATATA
ATAATATAGTATTTGATATAGTTATATATTATTTTTTTATTTATTTATTT
TTATTTTTTTTTTATTTTTTATTTGTTTTTTTTTTATTTTTCTTTTCATT
ATTCCATTATTATTTAATTTCTTTCTTCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_l14.b1 MSMg01no280_l14.b1 CHROMAT_FILE:
MSMg01no280_l14.b1 PHD_FILE: MSMg01no280_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:38 2005
         (234 letters)



>mm_chr12_68107982_68108615
          Length = 634

 Score =  437 bits (226), Expect = e-127
 Identities = 232/234 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtatggctactgttgtttgtaagaattctgaggctaatgctatcaaaatgtttttgatga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gtatggctactgttgtctgtaagaattctgaggctaatgctatcaaaatgtttttgatga 375

                                                                       
Query: 61  aaagctatttactgtggttatgattattttataattacccaaattaatgctctctctcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 374 aaagctatttactgtggttatgattattttataattacccaaattaatgttctctctcaa 315

                                                                       
Query: 121 acactattttctaagacttcatatgctctctttacatcctgccctctttcctttgaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acactattttctaagacttcatatgctctctttacatcctgccctctttcctttgaaaaa 255

                                                                 
Query: 181 gcaattgtatctataatcattgcttgctgcatgcctttctcatgtgcccttgag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gcaattgtatctataatcattgcttgctgcatgcctttctcatgtgcccttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)