BAC Information

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BAC

Clone NameMSMg01-280M03
Chromosome12 (Build37)
Map Location 34,978,481 - 35,070,735
singlet/doubletdoublet
Overlap geneHdac9
Upstream geneAtxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280M03.T7 (MSMg01no280_m03.b1)MSMg01-280M03.TJ (MSMg01no280_m03.g1)
ACCAG417769AG417770
length728730
length of high quality
(start - end)		611 (71 - 681)654 (77 - 730)
definitionCHROMAT_FILE: MSMg01no280_m03.b1 PHD_FILE: MSMg01no280_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:40 2005CHROMAT_FILE: MSMg01no280_m03.g1 PHD_FILE: MSMg01no280_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,978,481 - 34,979,091)(35,070,082 - 35,070,735)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCATTTGGTACCCATTTGGGAGTCCTGAATTCCAGCCCTCACTCTCCC
ATGTCATGACAATAGTTACCCCTGAGACATCTCCACAGGCTTTTGCTTCC
TCAGGTACAAAAATACAGGTGTGAGCAGACTATTTTGAAGTTTGCACTCA
GCCTTAAATGATAAGATTTTGGGCAAAACTAATAAAGCTTATGTATATAA
AACTTAAAAACACATTTCACTGTTGTTTATGAATTTGCTTTAGGGAAGAA
AATGCAACTTCAATGATTGTTATTGTTTTTGAGGCAAGAGAAGAGACTCG
GGAGTATTTTCAACAGAGTTTCAAGTGAAGCCAATGATTATAGGTATGAT
CACAATTAAGAAAAACCATAGGTTTTCTTAGCTGGTGAGGTGGTGCAGTG
GGTAACAGTACTTGCTCTGAGGCCTGACACCCTAGGTCCCACTTGGGAGT
CAGAGAGAACAGACTCGCTAAGATCATCCCAGACCTCCTCACCCCTCAGC
ACACAATTCTCATAAATAAGTACATTTTAAAGTGGGTTTTTAAAAAAGCA
TATGTATTCTGAAAAGTTAGGACTTCAAATAACTTTTCTCCCAGTTTTTT
CCCAATGGCAGTGGTGTTTGTGTGTGTGTGTGTGTGTGCGACTTCTGCTT
TTGTTTGTCTGTTGCCGCTTGTTTGCGT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGAGAAAACTCACTCCG
GAAGATTTATCATTCTCTTCTCAACCATGAACACTATTTCCACAGAAAGA
TGCTTAACCATGCAGAAATCACATCTTATATCATCTCTTTGTGTGTTTTC
GACAGCTTTAACAGATAGAAATTATGAATTTTTATCCCCAGTGTATGTAT
ATTTAGACTATGGCACTCAGTGTTTTGACAACCTTAAGGAACAAACAAAC
AAATAAACAAAGACTTTCTTTATCCTAGAACCACTTGGTTTTACCTTGTT
TCACCTGGGTTTTGTTTCTCCTGTTAGGAGTCAAAAGAATTGTCAAAATT
TTCACAAAATTATAAAAGAGCTGCCACAACCACCAAAAAAATAGTAGGAT
ATGAACAATTTTCTCCTGAGCCTGCCTTATAGGCTGTCAGTCTCCCCCAC
CCTACCCCTCACCCCCAGGACAATAAAACAGTGATCTAGTTAAAAACAAA
CACACAACAGTCATTTTCCACATGGAAGAGCTTTTAGATATAGTTTAACA
AAAGTACACATATGCAGTCATGTCATTGTGGGCGTGTTGTTTTCCTGAAT
GCCCTTTTCGTTGAAGAGTTGAGGACTCAACTCCATGTTGAGGCATCAGA
TCTCTGACATCCCCTGCCCTCCAACCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_m03.b1 MSMg01no280_m03.b1 CHROMAT_FILE:
MSMg01no280_m03.b1 PHD_FILE: MSMg01no280_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:40 2005
         (611 letters)



>mm_chr12_34978281_34979291
          Length = 1011

 Score = 1151 bits (595), Expect = 0.0
 Identities = 607/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagtcctgaattccagccctcactctcccatgtcatgacaatagttacccctgagacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ggagtcctgaattccagccctcactctcccatgtcatgacaatagttacccatgagacat 260

                                                                       
Query: 61  ctccacaggcttttgcttcctcaggtacaaaaatacaggtgtgagcagactattttgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccacaggcttttgcttcctcaggtacaaaaatacaggtgtgagcagactattttgaag 320

                                                                       
Query: 121 tttgcactcagccttaaatgataagattttgggcaaaactaataaagcttatgtatataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgcactcagccttaaatgataagattttgggcaaaactaataaagcttatgtatataa 380

                                                                       
Query: 181 aacttaaaaacacatttcactgttgtttatgaatttgctttagggaagaaaatgcaactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttaaaaacacatttcactgttgtttatgaatttgctttagggaagaaaatgcaactt 440

                                                                       
Query: 241 caatgattgttattgtttttgaggcaagagaagagactcgggagtattttcaacagagtt 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatgattgttacggtttttgaggcaagagaagagactcgggagtattttcaacagagtt 500

                                                                       
Query: 301 tcaagtgaagccaatgattataggtatgatcacaattaagaaaaaccataggttttctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcaagtgaagccaatgattataggtatgatcacaattaagaaaaaccataggttttctta 560

                                                                       
Query: 361 gctggtgaggtggtgcagtgggtaacagtacttgctctgaggcctgacaccctaggtccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctggtgaggtggtgcagtgggtaacagtacttgctctgaggcctgacaccctaggtccc 620

                                                                       
Query: 421 acttgggagtcagagagaacagactcgctaagatcatcccagacctcctcacccctcagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttgggagtcagagagaacagactcgctaagatcatcccagacctcctcacccctcagc 680

                                                                       
Query: 481 acacaattctcataaataagtacattttaaagtgggtttttaaaaaagcatatgtattct 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acacaattctcgtaaataagtacattttaaagtgggtttttaaaaaagcatatgtattct 740

                                                                       
Query: 541 gaaaagttaggacttcaaataacttttctcccagttttttcccaatggcagtggtgtttg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaaaagttaggacttcaaataacttttctcccagttttttcccaatggcagtggtgtttg 800

                      
Query: 601 tgtgtgtgtgt 611
           |||||||||||
Sbjct: 801 tgtgtgtgtgt 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no280_m03.g1 MSMg01no280_m03.g1 CHROMAT_FILE:
MSMg01no280_m03.g1 PHD_FILE: MSMg01no280_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:40 2005
         (654 letters)



>mm_chr12_35069882_35070935
          Length = 1054

 Score = 1234 bits (638), Expect = 0.0
 Identities = 650/654 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacaggagaaaactcactccggaagatttatcattctcttctcaaccatgaacacta 60
           |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 854 caggacaggagaaaactcactccggaagatttatcattctcttcacaagcatgaacacta 795

                                                                       
Query: 61  tttccacagaaagatgcttaaccatgcagaaatcacatcttatatcatctctttgtgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tttccacagaaagatgcttaaccatgcagaaatcacatcttatatcatctctttgtgtgt 735

                                                                       
Query: 121 tttcgacagctttaacagatagaaattatgaatttttatccccagtgtatgtatatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tttcgacagctttaacagatagaaattatgaatttttatccccagtgtatgtatatttag 675

                                                                       
Query: 181 actatggcactcagtgttttgacaaccttaaggaacaaacaaacaaataaacaaagactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 actatggcactcagtgttttgacaaccttaaggaacaaacaaacaaataaacaaagactt 615

                                                                       
Query: 241 tctttatcctagaaccacttggttttaccttgtttcacctgggttttgtttctcctgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tctttatcctagaaccacttggttttaccttgtttcacctgggttttgtttctcctgtta 555

                                                                       
Query: 301 ggagtcaaaagaattgtcaaaattttcacaaaattataaaagagctgccacaaccaccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ggagtcaaaagaattgtcaaaattttcacaaaattataaaagagctgccacaaccaccaa 495

                                                                       
Query: 361 aaaaatagtaggatatgaacaattttctcctgagcctgccttataggctgtcagtctccc 420
           ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 494 aaaaatagtagaatatgaacaattttctcctgagcccgccttataggctgtcagtctccc 435

                                                                       
Query: 421 ccaccctacccctcacccccaggacaataaaacagtgatctagttaaaaacaaacacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ccaccctacccctcacccccaggacaataaaacagtgatctagttaaaaacaaacacaca 375

                                                                       
Query: 481 acagtcattttccacatggaagagcttttagatatagtttaacaaaagtacacatatgca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 acagtcattttccacatggaagagcttttagatatagtttaacaaaagtacacatatgca 315

                                                                       
Query: 541 gtcatgtcattgtgggcgtgttgttttcctgaatgcccttttcgttgaagagttgaggac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gtcatgtcattgtgggcgtgttgttttcctgaatgcccttttcgttgaagagttgaggac 255

                                                                 
Query: 601 tcaactccatgttgaggcatcagatctctgacatcccctgccctccaacccaca 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcaactccatgttgaggcatcagatctctgacatcccctgccctccaacccaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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