BAC Information

Click to search

BAC

Clone NameMSMg01-288D14
Chromosome12 (Build37)
Map Location 35,794,137 - 35,977,662
singlet/doubletdoublet
Overlap geneSnx13
Upstream geneHdac9, 4921508M14Rik, Prps1l1
Downstream geneAhr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288D14.T7 (MSMg01no288_d14.b1)MSMg01-288D14.TJ (MSMg01no288_d14.g1)
ACCAG418108AG418109
length751757
length of high quality
(start - end)
321 (47 - 367)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no288_d14.b1 PHD_FILE: MSMg01no288_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:15 2005CHROMAT_FILE: MSMg01no288_d14.g1 PHD_FILE: MSMg01no288_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,977,348 - 35,977,662)(35,794,137 - 35,794,428)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTATATCTCTCATTAATATGGAGAAGTACGTGCCTTTAATCTC
CAGGGAAATCCTGATGCTGTGAGCCCAACACAGTAGTAGGTTTCTGAAAT
TAACTGTTGTGATTGATGATCTGGGTATGACAGTGTGGACCGCTTTAAAT
TTCAGCTTACCAACAGAATAATCAAACTAGAAGTTAAGTTGAATGCTGAC
TTTATAAGGTCTTTTATGTTTAATTTAATTTGAAATGTTCTTTAGTTTGA
AGATTTTTGTTATCTGATTTTATATATACTGCCAGAGTTGCTGCTTTGGG
TAAAAATAAAAAATATTTTTGTACCACCGCCCCCACCAATGAGATTCAGA
ACAATTTTCTTCTGTTCAACGCTAATTTTTTGGAGATTTCTGTAAGATTC
CACCCAATTTTATGGCCACATTAAAGTCTCAGAAGACTCCCCATATTGTT
CAGTGCTGCTGGAGTTCAGCTTTCAGAAGTGCCTACCGTGTTGGAGAGAG
GGGTTAGGGGCAGCTTGAGAACTAAGCTGCTTTTGCTAGGGTCAGTGAAG
GCTGGGAGGGGAATTCAGTGAATGGGGCCAGCATCCAGCTTCATAGAGAA
TCTTTTCTTCAGTTGAAATTGTGGACTGCAATCGATGGTTTGAAAGGAAT
GAAGTTGGTGTATCTCGCCGAAGAAGTTCTGTGGATACTTTTATTAGACA
N
TCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTATAAACCAAAGATGAA
AAACCTAGATGAAATTTTCTGTACGTTTGCTTGTGGTCAGAGGCTTGGGG
AGCTAAGCAGTGTTCCTTGTTATTTAGAATAACATGTTCTCTAGAACAGA
AGGCTGTAACAGCTACTCTTTCAGAATTGTAAGTGATTCAGTCTTTTTGA
AGATTCATTTAAGAACGTTAAATTTATAAATGCGTTAAGATCTGGAAAAG
GTACATTAACTTTAAACTATATATGAATAGTGTTTTAGCATAGCTTTTTC
TTGTGTTTTTAAACTAAATTGTTTTTTTTACTCCCCCCACTCCATATATA
ATAAAGCAAGGGGGAAAGAAGAGCACACCACTGCATGTTAATAATCTTTC
TTTGATTGCTTTGCTAATGTTTATTTTTATTCTAACAGTTAAATTCTCTT
CCAAGGCTTAAAATAGTTTGTTTGTTTGTTTGTTTTGTTTTTGTTTTTAA
AGTCACCTTACAAAGCAGTGAGTCTCGTGGCACCTTGTACTTGTTTTCCT
CCCCTTCTATCACTGACTCTGTCTCTGTCTCTTTGCAAACACCCATCTTC
AGGTCCAGCTTCTTTCCTAACATTCATTAAACCAAACCAAACAAAACAAA
ACTTTTCTCATCATTATTGCCTTATTAAATGACATTTCATACATATAATT
TTAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_d14.b1 MSMg01no288_d14.b1 CHROMAT_FILE:
MSMg01no288_d14.b1 PHD_FILE: MSMg01no288_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:15 2005
         (321 letters)



>mm_chr12_35977144_35977864
          Length = 721

 Score =  594 bits (307), Expect = e-174
 Identities = 313/315 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttatatctctcattaatatggagaagtacgtgcctttaatctccagggaaatc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccttatatctctaattaatatggagaagtacgtgcctttaatctccagggaaatc 460

                                                                       
Query: 65  ctgatgctgtgagcccaacacagtagtaggtttctgaaattaactgttgtgattgatgat 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctgatgctgtgagccaaacacagtagtaggtttctgaaattaactgttgtgattgatgat 400

                                                                       
Query: 125 ctgggtatgacagtgtggaccgctttaaatttcagcttaccaacagaataatcaaactag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctgggtatgacagtgtggaccgctttaaatttcagcttaccaacagaataatcaaactag 340

                                                                       
Query: 185 aagttaagttgaatgctgactttataaggtcttttatgtttaatttaatttgaaatgttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aagttaagttgaatgctgactttataaggtcttttatgtttaatttaatttgaaatgttc 280

                                                                       
Query: 245 tttagtttgaagatttttgttatctgattttatatatactgccagagttgctgctttggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tttagtttgaagatttttgttatctgattttatatatactgccagagttgctgctttggg 220

                          
Query: 305 taaaaataaaaaata 319
           |||||||||||||||
Sbjct: 219 taaaaataaaaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no288_d14.g1 MSMg01no288_d14.g1 CHROMAT_FILE:
MSMg01no288_d14.g1 PHD_FILE: MSMg01no288_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:15 2005
         (292 letters)



>mm_chr12_35793937_35794628
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtttataaaccaaagatgaaaaacctagatgaaattttctgtacgtttgcttgtggt 60
           |||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||
Sbjct: 201 tctgtttataaaccaaagatgaaatacctagatgaaattttctgtacgtttttttgtggt 260

                                                                       
Query: 61  cagaggcttggggagctaagcagtgttccttgttatttagaataacatgttctctagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggcttggggagctaagcagtgttccttgttatttagaataacatgttctctagaac 320

                                                                       
Query: 121 agaaggctgtaacagctactctttcagaattgtaagtgattcagtctttttgaagattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaggctgtaacagctactctttcagaattgtaagtgattcagtctttttgaagattca 380

                                                                       
Query: 181 tttaagaacgttaaatttataaatgcgttaagatctggaaaaggtacattaactttaaac 240
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaagaatgataaatttataaatgcgttaagatctggaaaaggtacattaactttaaac 440

                                                               
Query: 241 tatatatgaatagtgttttagcatagctttttcttgtgtttttaaactaaat 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatatgaatagtgttttagcatagctttttcttgtgtttttaaactaaat 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)