CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTAGTAATGACTAGGAATCTTCCTTGCTGGCTAACATTCACAG
TGCCAGAAGGTGCTATCTAGGATGCTGGAGAAGATGTCATCAGTAGTCTT
ATCAAATGGGAACACTGTGAACATCTAAATATATGAAGCTAGAAGACACA
TATAAAGGAGAACATTCAGTATTTGTACTCTTTGTCTTATTGTTGTATCT
GAGGCTTTACATAGAATATATGGACTTTTACATAGACTGGAAAAGATTGT
GCATTCTTGTTTCATTCCAAATTATATACATATTAAAAAATTGTCAGTTT
CCCCCCCCCTTGAATATTTGTTACCTCGCCCCCCCTTTGGGAACAATGGC
TGACGTGGAGATCTATCCCCATTGCTGCCATCCTGCCATGAATGTTGTGA
TATAGCTAGGAGTTTCTAACTGGACAAGAGGAAATCCATGCTGGTACTGT
AAACTCACCAGGAAGTCATGGCTGGAAAAGTTACCAACTCTACTAATATT
ATTTTGCTAAAGAAACAGTTTCAAACTGCCTAAATGCAACCTCCTTTCTC
CAAAAGCTTCATCTGCTCTCAATCCCTCTTATTCACTACTGGATAAGTGT
CATGCGAGCTACCTGCTTTGTGTACTATTACTACAAAAGGCACACTGATG
TGCCAAGGAGCTCCTCTTGCCTCACTGGGTCTCAGTCN

CAATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCTTGAAAGATTTGAAGTCATT
TTAATTTCCTTATGACAGGTGGTCAGCCCCTGTCATTTTCACATAACCCT
GGCATACGCACTTAACGGCATACAACATTTTGCAAAGATTGGTTAACCTT
TCTTCTTTATTTAATATTTTGTCTCCTCTGGAATGAATATTTCATACCTT
CTGGTTTCTTGCAGAAGATCCTAAAACCTTACTTGAAAGATGCATCCTTA
TTGAATTATTAATCACAATATGACTGGGTTAAGCTCCAAAATTCCCTCAC
ATTTTTGAGTACGGAGTCTCTTATTACACGCTTCTCTAGAAGGCATAATA
TTCTTAGGGTCAGAAAAAGTGTGTGTAGTCTGTGTGCAGTCAGGAAAGGG
GAAGGAACCAACCCATCAGACATATTCTGCAGGCCTATCAGCTATCTAGA
AAATGTGTAAGGCTTTCATATTTGTAGGTCTTTCCATAATTTCATCTTTA
TCCTTGAGTATTGCATTACCCCTAGAGTATCTCAATGTATCATGATGTCT
AGCTTTCCAGTCTTCATGGATAGGACTCCACTCATTGTTTTGCTTGAAGT
GCTTTGCACACATATCTTCCCACATAGATATCTACTTACAGGATTATAGA
GCAAGAACTTGGGATTTTATTTGTTTGCTTGCTGCATCATN

Query= MSMg01no290_j10.b1 MSMg01no290_j10.b1 CHROMAT_FILE:
MSMg01no290_j10.b1 PHD_FILE: MSMg01no290_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:11 2005
         (321 letters)



>mm_chr12_44798455_44799175
          Length = 721

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatctagtaatgactaggaatcttccttgctggctaacattcacagtgccagaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatctagtaatgactaggaatcttccttgctggctaacattcacagtgccagaa 264

                                                                       
Query: 65  ggtgctatctaggatgctggagaagatgtcatcagtagtcttatcaaatgggaacactgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggtgctatctaggatgctggagaagatgtcatcagtagtcttatcaaatgggaacactgt 324

                                                                       
Query: 125 gaacatctaaatatatgaagctagaagacacatataaaggagaacattcagtatttgtac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaacatctaaatatatgaagctagaagacacatataaaggagaacattcagtatttgtac 384

                                                                       
Query: 185 tctttgtcttattgttgtatctgaggctttacatagaatatatggacttttacatagact 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctttgtcttattgctgtatctgaggctttacatagaatatatggacttttacatagact 444

                                                                       
Query: 245 ggaaaagattgtgcattcttgtttcattccaaattatatacatattaaaaaattgtcagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaaagattgtgcattcttgtttcattccaaattatatacatattaaaaaattgtcagt 504

                            
Query: 305 ttcccccccccttgaat 321
           | |||||||||||||||
Sbjct: 505 tccccccccccttgaat 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_j10.g1 MSMg01no290_j10.g1 CHROMAT_FILE:
MSMg01no290_j10.g1 PHD_FILE: MSMg01no290_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:11 2005
         (292 letters)



>mm_chr12_44978965_44979656
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttgaaagatttgaagtcattttaatttccttatgacaggtggtcagcccctgtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 492 actcttgaaagatttgaagtcattttaatttccttatgacaggtggtcaggtgctgtcat 433

                                                                       
Query: 61  tttcacataaccctggcatacgcacttaacggcatacaacattttgcaaagattggttaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 432 tttcacataaccctggcatacgcacttaacggcatacaacattttgcaaagattagttaa 373

                                                                       
Query: 121 cctttcttctttatttaatattttgtctcctctggaatgaatatttcataccttctggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctttcttctttatttaatattttgtctcctctggaatgaatatttcataccttctggtt 313

                                                                       
Query: 181 tcttgcagaagatcctaaaaccttacttgaaagatgcatccttattgaattattaatcac 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 312 tcttgcagaagatcctaaaaccttacttgaaagatgcatccctattgaattattaatcac 253

                                                               
Query: 241 aatatgactgggttaagctccaaaattccctcacatttttgagtacggagtc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aatatgactgggttaagctccaaaattccctcacatttttgagtacggagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)