Query= MSMg01no291_b01.b1 MSMg01no291_b01.b1 CHROMAT_FILE:
MSMg01no291_b01.b1 PHD_FILE: MSMg01no291_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:46 2005
(647 letters)
>mm_chr12_42744282_42745328
Length = 1047
Score = 1236 bits (639), Expect = 0.0
Identities = 645/647 (99%)
Strand = Plus / Plus
Query: 1 gattatgcaaattaagcttctgaattggatagaatgcaactatcattaaaatcaagagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gattatgcaaattaagcttctgaattggatagaatgcaactatcattaaaatcaagagaa 260
Query: 61 tgcttgctacatgatggaaattgaaatgaaccctaaattgatgtttcagccccagtctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcttgctacatgatggaaattgaaatgaaccctaaattgatgtttcagccccagtctct 320
Query: 121 tcttatggctttcaaaaaaataatgctttcccttattattaaagcctgcaatgttcttag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttatggctttcaaaaaaataatgctttcccttattattaaagcctgcaatgttcttag 380
Query: 181 caataaagtggaaagaaatcaagaaggaaactggtaaaacttctgcccacagcaagtgaa 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 caataaagtggaaagaaatcaagaaggaaactggtaaaacttctacccacagcaagtgaa 440
Query: 241 gtgtcactgtgtactgtctttaagtctgctattaggaggcttataattctcttatttgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtcactgtgtactgtctttaagtctgctattaggaggcttataattctcttatttgta 500
Query: 301 tttttattagaatgttctcattactagtaagaatagatagtgcacatgtttactgacctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttattagaatgttctcattactagtaagaatagatagtgcacatgtttactgacctt 560
Query: 361 gtattttttttctgagacatgctggagaattctgaattttcgaagatagtatttaatgct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtattttttttctgagacatgctggagaattctgaattttcgaagatagtatttaatgct 620
Query: 421 gtattttcaatctcaacattaagtatttaatatgattccttgtcatatttagatcaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtattttcaatctcaacattaagtatttaatatgattccttgtcatatttagatcaaata 680
Query: 481 tattatatgattggcttgtagttttattaattcttaggagtgtttaaaggagtaggatat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattatatgattggcttgtagttttattaattcttaggagtgtttaaaggagtaggatat 740
Query: 541 ataaatatttttaaaataattcaacctcactatctccagctttagatctatggtgtatgc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataaatatttttaaaataattcaacctcactatctccagctttagatctatggtgtatgc 800
Query: 601 atttttgaaaaatatgccatacattatatacctcccactattggctg 647
||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 801 atttttgaaaaatatgccatacattatatccctcccactattggctg 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no291_b01.g1 MSMg01no291_b01.g1 CHROMAT_FILE:
MSMg01no291_b01.g1 PHD_FILE: MSMg01no291_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:46 2005
(641 letters)
>mm_chr12_42900428_42901467
Length = 1040
Score = 1079 bits (558), Expect = 0.0
Identities = 570/574 (99%), Gaps = 1/574 (0%)
Strand = Plus / Minus
Query: 1 ccattcttgtctgaatttttagtcctctcaaatctcaaggtcacatctcctttctgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ccattcttgtctgaatttttagtcctctcaaatctcaaggtcacatctcctttctgtctc 514
Query: 61 aggtcctgatatatcaaatttaaaatattcaagtgaaagtcatcagttttttcaaaaata 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aggtcctgatacatcaaatttaaaatattcaagtgaaagtcatcagttttttcaaaaata 454
Query: 121 tttttccttacttttctcattgacaatatgaataatcactgtctgaaccagaaatatgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tttttccttacttttctcattgacaatatgaataatcactgtctgaaccagaaatatgga 394
Query: 181 ggtctcttcttttctctcccctcactccattctagatgtttacacaattagtatgctcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggtctcttcttttctctcccctcactccattctagatgtttacacaattagtatgctcta 334
Query: 241 cctccaaacaaagttcagatctacttatgctcactcatgaagcatttgaaataaacacaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cctccaaacaaagttcagatctacttatgctcactcatgaagcatttgaaataaacacaa 274
Query: 301 agttttatttgattgagaactattaattatcttccactatttttttttaaacctaaggct 360
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 273 agttttatctgattgagaactattaattatcttccactatttttttt-aaacctaaggct 215
Query: 361 acagccttgccaacagtgatgattaatattgactgtcaacttgacaggatctagaatccc 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 acagccttgccaacggtgatgattaatattgactgtcaacttgacaggatctagaatccc 155
Query: 421 ctagtcagtgctggaatttctagattgtgctgattgccttgggaagagccaccctaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ctagtcagtgctggaatttctagattgtgctgattgccttgggaagagccaccctaaata 95
Query: 481 gaatcccagcctgcaaaacattagtccagctgagaccagcatgcattgctccctgcttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 gaatcccagcctgcaaaacattagtccagctgagaccagcatgcattgctccctgcttcc 35
Query: 541 tgactgaaaactccacccaatgtcctgcagcatc 574
||||||||||||||||||||||||||||||||||
Sbjct: 34 tgactgaaaactccacccaatgtcctgcagcatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
