Query= MSMg01no293_h06.b1 MSMg01no293_h06.b1 CHROMAT_FILE:
MSMg01no293_h06.b1 PHD_FILE: MSMg01no293_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:52 2005
(674 letters)
>mm_chr12_90763298_90764371
Length = 1074
Score = 1208 bits (625), Expect = 0.0
Identities = 661/675 (97%), Gaps = 5/675 (0%)
Strand = Plus / Plus
Query: 5 gaattcactttgtagacctacctagccttgaactcagagatccacctgcttctgcctccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcactttgtagacctacctagccttgaactcagagatccacctgcttctgcctccc 260
Query: 65 aagtccagagattaaaggtgtgtgccacctggcccagcagaatgtacctcatttttaagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtccagagattaaaggtgtgtgccacctggcccagcagaatgtacctcatttttaagt 320
Query: 125 tagaagaaaaatcatggtctaccatatactacttaaaacaaaacaaaacaaaacccccaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagaagaaaaatcatggtctaccatatactacttaaaacaaaacaaaacaaaacccccaa 380
Query: 185 tcaatcaatcaatcaat----aatcaattaatcaaactaaaaaaccaataacgggctcca 240
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaatcaatcaatcaatcaataatcaattaatcaaactaaaaaaccaataacgggctcca 440
Query: 241 agcccaaatttgtttatatggactacaattaataaattctagagaaatttatttttcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcccaaatttgtttatatggactacaattaataaattctagagaaatttatttttcagg 500
Query: 301 aaaaattggctttaaacactaatgttttatgtcttcccctttacctctgtagcttccatt 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaattggctttaaacactaatggaatatgtcttcccctttacctctgtagcttccatt 560
Query: 361 cttccttttccgcccccctctcccagcccctctccttctttcttgcccctcttctttctg 420
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttccttttccgtctttctctcccagcccctctccttctttcttgcccctcttctttctg 620
Query: 421 atgggatttt-gttccatctttcctttcctcctttctttcttccatcccactcactgggc 479
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgggttttttgttccatctttcctttcctcctttctttcttccatcccactcactgggc 680
Query: 480 ttccttccctcctcataatccttcattcattcactacagactcaggaatctccactccat 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 ttccttccctcctcataatccttcattcattcactacagactcaggagtctccactccat 740
Query: 540 ctataggtctcaaacccatgggttgcaaccctttagcaaatatctatctccaaaaatatt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctataggtctcaaacccatgggttgcaaccctttagcaaatatctatctccaaaaatatt 800
Query: 600 tgcactacaattcataaagtaaccaaaattatattatgaagcagcaacaaaaataactgt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgcactacaattcataaagtaaccaaaattatattatgaagcagcaacaaaaataactgt 860
Query: 660 atggttgggggtgtc 674
|||||||||||||||
Sbjct: 861 atggttgggggtgtc 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no293_h06.g1 MSMg01no293_h06.g1 CHROMAT_FILE:
MSMg01no293_h06.g1 PHD_FILE: MSMg01no293_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:28:52 2005
(296 letters)
>mm_chr12_90939871_90940566
Length = 696
Score = 567 bits (293), Expect = e-166
Identities = 293/293 (100%)
Strand = Plus / Minus
Query: 1 tttaaggcagactgtggagggaagagactgagaaggatgttaagatggcaggcaggctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tttaaggcagactgtggagggaagagactgagaaggatgttaagatggcaggcaggctag 434
Query: 61 agtctatgtggaaagggacagagaatgtgtactgagctggtctctagatgacagcaagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agtctatgtggaaagggacagagaatgtgtactgagctggtctctagatgacagcaagaa 374
Query: 121 aacttgttctaacacaaatctaaagaaagttctaagcttaggcagtccctaacttccgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aacttgttctaacacaaatctaaagaaagttctaagcttaggcagtccctaacttccgct 314
Query: 181 ggatccgaggaaaaagaaaatagtttctgagtttgctgatgagttatgctcaagtcagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggatccgaggaaaaagaaaatagtttctgagtttgctgatgagttatgctcaagtcagac 254
Query: 241 agggtgtgaaaaggatacaatcccttagggcagtggtagtgcccacatttgat 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agggtgtgaaaaggatacaatcccttagggcagtggtagtgcccacatttgat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space: 197169
Effective search space used: 197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
