BAC Information

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BAC

Clone NameMSMg01-294I04
Chromosome12 (Build37)
Map Location 35,540,208 - 35,712,022
singlet/doubletdoublet
Overlap gene4921508M14Rik, Prps1l1
Upstream geneFerd3l, Twist1, Hdac9
Downstream geneSnx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I04.T7 (MSMg01no294_i04.b1)MSMg01-294I04.TJ (MSMg01no294_i04.g1)
ACCAG422664AG422665
length733730
length of high quality
(start - end)
299 (435 - 733)294 (71 - 364)
definitionCHROMAT_FILE: MSMg01no294_i04.b1 PHD_FILE: MSMg01no294_i04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:12 2005CHROMAT_FILE: MSMg01no294_i04.g1 PHD_FILE: MSMg01no294_i04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,711,888 - 35,712,022)(35,540,208 - 35,540,499)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTGAATCTCCCTTGGAATATAATGCACACAATAGTATATAATATAGT
GCTTTCATTTAAAGTAAATTTGTTTTAGAATTTAAAGTTTTTTTAGAACT
AAAACTCTACCACCTCAGACCCAAGAGACAACATTATAAATAACCTAAAG
TGAGCCCAAAATACTTAAGGCTTTTCACAGGAAGACAACTAGAGTAATAA
GCACAGCTCCTGACAACCACAGGGAGGCTAAAGCTTGTAAAGCAACTGGC
CCATTTTTTGAAGAATTTTGCCACTTTCAATGTGTATGATTAGTTGAAAC
TCAGTGTCACGTTTTATTAACCCCACCCCCCCCATTAAAAGTTGCCATCT
GACCTTGCACTGTGTGAGGGGTTGAAATAAAGACATCTGGCTTAGATGGA
AGTACCTTTACCCACTGAACCATCTTGCTTGTCCCAGGGGAATCTGATAC
TGAACATATTGGATGTTTTCTGGAATTTTGAAAAGATACACTGTAAGTAT
TTTCTGAAAAGAAAACTAATAAAGGTATTTGTTGATACAGGAAAAAAAAA
AGTTGCCATCTGACGAGCATTAATTGCCACAAAGAAAGAAATTCTATCTT
CAAGTCTACAACTGAAGCTTGTTCGTATGGGTGATCCAGCTTAGTCTGAC
TTATAAGGCTCTACTATTTTGCCGTATATTTGG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACTCTGAAAACAGTTTTGCATAGTAGTAT
TTTTAGCTTCTCAAAACTGGCCTGATTCTCCTTTCGCTGGATGAAAAGAA
TCCCCTCTGAAATTTCTAACGTAGCAAACAAAGTTCGGAGAACATTTCTG
ATTCCAGCAGGTGGTCACAGGCATGAGGTCAGGGTGACAGCCAGCAGTGT
TGATGTCACTCAGAATCCTGCCAAGGGCCTAGGGATGGGACACTGTTCGC
TGTGCTGATAACTCACAAGTGATCTTTCCTTCCTTCTGTGCAGTCCTTGT
AGCTAATTTTTATTTCTAACCACCCCTATTCACTTTCTATTGCCTCAAAC
AGACTGACACATGGCCATCCGATGATGAGAACAACCCATGAGGTTTGATA
ATGTCAGGCATAAGTGCAACTAAAGTAGGAGTTAGACCCTAGCTCCAATA
GTCTTGGGGTATCAGAGACATAGACAGGTCTTTGTGGGCACCTAAAGGCT
CATTTATTTCCCTAGAAGTCACTTAATAATTTTTTATGAAAATATGCATG
ATGCTAATAAATAATAATTTTCTATCGCAACTGAATCACACATAATGCAG
GTAATACTCAGCCACCTCACTGACTATAATGGCAAGCTTCCCAGTAAAGA
GTCTGGGACCTTATCACCGACCCACCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i04.b1 MSMg01no294_i04.b1 CHROMAT_FILE:
MSMg01no294_i04.b1 PHD_FILE: MSMg01no294_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:12 2005
         (299 letters)



>mm_chr12_35711525_35712223
          Length = 699

 Score =  238 bits (123), Expect = 3e-67
 Identities = 132/135 (97%)
 Strand = Plus / Minus

                                                                       
Query: 164 aaaagttgccatctgacgagcattaattgccacaaagaaagaaattctatcttcaagtct 223
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaaagttgccatctgacgagcattaattgccacaaagaaagaaattctatcttcaagtct 439

                                                                       
Query: 224 acaactgaagcttgttcgtatgggtgatccagcttagtctgacttataaggctctactat 283
           |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 438 acaactgaagcttgttcgtatgggtgatccagcttagtttgacttataaagctctactat 379

                          
Query: 284 tttgccgtatatttg 298
           ||||| |||||||||
Sbjct: 378 tttgcagtatatttg 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no294_i04.g1 MSMg01no294_i04.g1 CHROMAT_FILE:
MSMg01no294_i04.g1 PHD_FILE: MSMg01no294_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:12 2005
         (294 letters)



>mm_chr12_35540008_35540701
          Length = 694

 Score =  557 bits (288), Expect = e-163
 Identities = 291/292 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctgaaaacagttttgcatagtagtatttttagcttctcaaaactggcctgattctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctgaaaacagttttgcatagtagtatttttagcttctcaaaactggcctgattctc 260

                                                                       
Query: 61  ctttcgctggatgaaaagaatcccctctgaaatttctaacgtagcaaacaaagttcggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcgctggatgaaaagaatcccctctgaaatttctaacgtagcaaacaaagttcggag 320

                                                                       
Query: 121 aacatttctgattccagcaggtggtcacaggcatgaggtcagggtgacagccagcagtgt 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 aacatttctgattccagcaggtggtcacaggcatgaggttagggtgacagccagcagtgt 380

                                                                       
Query: 181 tgatgtcactcagaatcctgccaagggcctagggatgggacactgttcgctgtgctgata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatgtcactcagaatcctgccaagggcctagggatgggacactgttcgctgtgctgata 440

                                                               
Query: 241 actcacaagtgatctttccttccttctgtgcagtccttgtagctaattttta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcacaagtgatctttccttccttctgtgcagtccttgtagctaattttta 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)