BAC Information

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BAC

Clone NameMSMg01-294M23
Chromosome12 (Build37)
Map Location 86,388,117 - 86,388,286
singlet/doubletsinglet
Overlap geneYlpm1
Upstream geneAcot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1
Downstream geneProx2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik, Nek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294M23.T7 (MSMg01no294_m23.b1)MSMg01-294M23.TJ (MSMg01no294_m23.g1)
ACCAG422886AG422887
length738738
length of high quality
(start - end)
234 (120 - 353)284 (72 - 355)
definitionCHROMAT_FILE: MSMg01no294_m23.b1 PHD_FILE: MSMg01no294_m23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:34 2005CHROMAT_FILE: MSMg01no294_m23.g1 PHD_FILE: MSMg01no294_m23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACT
GTGTTTGCCAGGACGACTTCACAGAATCCCCTGCCTCTGTCTCTGCCTCT
CTCCTGGATTATTGGCCCGCATTACCACGCTTGACCCTGACCCTTGTTTA
ACTCTCCCAGTCCCCCTGTTTTGTCTGTTTTGTAGGGAAGTTTGGTCACT
CACAACAGTGTAGATATTGGTTGGTTTGATCTAAGTTATCTTCTTTGTTA
GCACACACTTATATGTATCTATTCCTTTATAATTTCTTTCTTTTTTTTTT
TTTTAAATATATTTTTGGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
GATTTTTTTTTTTTTCTCTCCCCCCCCCCCTGATTGGTTTTGAGACTAGA
AACAACTCTGTCCCCCCCCCCAAAAAAAAAAAAAAAATTTGCGGGCGGTT
CGTGGTTTGTTTATCTTGAACTCCATTTATTTTCTGACTCTGATTTTATA
CTAATAATTCTTCGGTCATCTATTTCTTCATGCTTTTATTCTCTTTCAGT
TTCCCCCTAACTAAAATATTCCTTTAATTTATAAACATTGTAAATTGTCC
GCTGATTTATTTCTCCGTTTCTCCTCATCCACAAACAAATTTTTATGGAT
TGCCTTGATGTTTTGTTTCTCTATCAAATAATATATCTTAACATCCTTTT
TCCTTTTGTCTTTGCCGAAACCCTCCTTTTTTATTTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTCTGGAGGATTACTGAGGCAGGGGGAT
TACAAGCTCAAAGCCAGCCTTGAACTACAGATTACATAGGACAAGCCTTA
GGTTTCCTTCCATAATGCTGAAGTAAAAAGAAACCAAAGCCTCAGCTGGG
CGTGGTGGTGCACGCCTTTGATCCCAGCACTCAGGAGGCAGAGGCAGGCG
GACTTCTGAGTTGGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACAG
CTAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAACCAACCAAAC
AAACAAATTTTTTTTCCCAGCCCCTCGCCTGTATCCAGAGGGAGCTGGGG
TGGTGGCTGAACCCTAGGCGTGAAATAAAACTGTGTGTGCTGGACAGAAG
GCTGCAGGACTTGAGTGTGTTTGAGGGTTGAGGGTGCTCCTGGTCTATCT
AGCCTATGTTGTTCCAACCCCTTAAGACACTGTTGGTGACAGCCTTGGCT
CTGTTTTAAGCAGAGCTCTTCTCTGCCCACACAGCTCATTTCTTCTCAGA
CTTCTGCTCTGGATTTGAATTCAAATTGTGTTGAATCCAAAAGATAGGAT
CTGTGAGAATCTTACTGTAATTCAAATACCTAAAGTTCTAACCAGAACAT
TATAATAAAAACCTCTCCTGAAGCGACTTCAAAGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_m23.b1 MSMg01no294_m23.b1 CHROMAT_FILE:
MSMg01no294_m23.b1 PHD_FILE: MSMg01no294_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:34 2005
         (234 letters)



>mm_chr12_86387917_86388550
          Length = 634

 Score =  329 bits (170), Expect = 1e-94
 Identities = 170/170 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattaccacgcttgaccctgacccttgtttaactctcccagtccccctgttttgtctgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattaccacgcttgaccctgacccttgtttaactctcccagtccccctgttttgtctgtt 260

                                                                       
Query: 61  ttgtagggaagtttggtcactcacaacagtgtagatattggttggtttgatctaagttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtagggaagtttggtcactcacaacagtgtagatattggttggtttgatctaagttat 320

                                                             
Query: 121 cttctttgttagcacacacttatatgtatctattcctttataatttcttt 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctttgttagcacacacttatatgtatctattcctttataatttcttt 370


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)