BAC Information

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BAC

Clone NameMSMg01-295L10
Chromosome12 (Build37)
Map Location 105,888,264 - 106,056,556
singlet/doubletdoublet
Overlap geneDicer1, Clmn
Upstream geneSerpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc
Downstream gene4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295L10.T7 (MSMg01no295_l10.b1)MSMg01-295L10.TJ (MSMg01no295_l10.g1)
ACCAG423530AG423531
length745752
length of high quality
(start - end)
317 (42 - 358)280 (72 - 351)
definitionCHROMAT_FILE: MSMg01no295_l10.b1 PHD_FILE: MSMg01no295_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:43 2005CHROMAT_FILE: MSMg01no295_l10.g1 PHD_FILE: MSMg01no295_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:31:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,888,264 - 105,888,570)(106,056,299 - 106,056,556)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTCTTGCCTGCAGATGATTTGGTCGGAGGGAAGATGCCGTACTCAAGAA
AAACCAATTGCAGATACAGCTCTAAGAACATAGACAAAGCTCTTTTGGTT
CTGGGAAATCTGTCGGCTCGAAATAAGTTTAAGAGTCAGAGTTGGGGCTT
CCTCGAAGGCAGGCACCACCCTAAACTGCCCTGGCTTTTTGCTGTGCCTC
CCTCAACATCCCTGACACCCAGGGAGTCAGGATGTTCTCCGAGAGAGGCC
TGTCGTAAGTCAGAGAGCTCCTCTGGGTCTCCCAGAACTCTTCCCCACAG
TGCTGGATTTTTTTTTTGCCCCCCCCCCGAGCTCCAGGCTTCCAATCTGT
TTCCTTTAAAACTGCCCACGTTTGCAAAACAAAGAGAGCCTCTTAGAGAG
GGTGGGGTTTGTCCCATTGAAATTGAGTCCGTACATGCATAACATTAAGA
AATACACAACGAATCGGTATTTGATATTCCTATATTTCAATATTCCTTTG
ATATTCCAATATGACATTTATACTGCTGGGGTTTTATGCATTCCTTGTTT
TTTCTTTGATTCTCCTCGACCCACTGCTCTGAGTAGGGTTGCTTTTATCA
CCCGACCATGTTAGTGCATCTTGCTGCCGTATGCGCTTGCTATAGCCATC
CGCACTCCGAAAATGAATGCTTGCCTGCCCTGCCTGCGTTCTTTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGTGGGGCTGGAGAGGGACAGTGAGTCAG
GAAGTATTGCGTAATGGTTAGAGATGTTAGCTTTGGGGCCCAAGTGGGTT
CGGAACCTGGTTCTGTCACTCACTAAATGGGTGACCTTATTTCTCCCTGC
CTCGGTTGGCACGGTTTCAAAGTGGTGACCAGAGTACTCCTGTCAAGGGC
TCTTTAACTTTTGTTGCTTGATTTACATCCCCTAATGTGAACATTACATA
TCCTGGATATTTGTTTTATTTGCAAGCTTTCAGACTACAGTTTGCTCATT
TTGGGGTGTTTGTGATTTCCCCCCCCCCCCACCACACATTGCAGACTCTG
TCTCCAGGTCCCTCCCCTCGATAATAAAAAACAAAGCCACGTGAGGGGGG
GTGGTCGAATACTAAAACGTTTCTTATTGCCATCTGCCTAAACCCTTCAA
TGTAGGGCATGGTTTATCTTATTTGAGTCCCATCCTTTACGGAAGCTGGT
GTCCCGTACCTGCTCCTGCCCTTTCATGCCCTCCATCCGGAAATGTTACA
TTACCTTCCACACTTTACTTCTTTTTCCTTCTTTTTCTTTGTCTTTTGTC
CCTTTATCCCACTTTTCTCTTTCCCAATGTCTCGCTATTCCGTCCCTTAT
CCACTTGTTTTCCCCTTTATCCGCCTCTTGCTATCACTTTTTTTCCTTTT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_l10.b1 MSMg01no295_l10.b1 CHROMAT_FILE:
MSMg01no295_l10.b1 PHD_FILE: MSMg01no295_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:43 2005
         (317 letters)



>mm_chr12_105888054_105888770
          Length = 717

 Score =  547 bits (283), Expect = e-160
 Identities = 301/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 11  ttcttgcctgcagatgatttggtcggagggaagatgccgtactcaagaaaaaccaattgc 70
           |||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||
Sbjct: 211 ttcttgcctgcagatgatttggtcggagggaagaagccgtacacaagaaaagccaattgc 270

                                                                       
Query: 71  agatacagctctaagaacatagacaaagctcttttggttctgggaaatctgtcggctcga 130
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 agatacagctctaagaacacagacaaagctcttttggttctgggaaatctgtcggctcga 330

                                                                       
Query: 131 aataagtttaagagtcagagttggggcttcctcgaaggcaggcaccaccctaaactgccc 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aataagtttaagagtcagagttggggcttcctcgaaggcaggcaccaccctaaactgccc 390

                                                                       
Query: 191 tggctttttgctgtgcctccctcaacatccctgacacccagggagtcaggatgttctccg 250
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 391 tggctttttgctgtgcctccctcaacatccctgacacccagggagtcaggatgttccccg 450

                                                                       
Query: 251 agagaggcctgtcgtaagtcagagagctcctctgggtctcccagaactcttccccacagt 310
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 451 agagaggcctgtcgtaagtcagagagcacctctgggtctcccagaactcttccccacagt 510

                  
Query: 311 gctggat 317
           |||||||
Sbjct: 511 gctggat 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no295_l10.g1 MSMg01no295_l10.g1 CHROMAT_FILE:
MSMg01no295_l10.g1 PHD_FILE: MSMg01no295_l10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:31:43 2005
         (280 letters)



>mm_chr12_106055982_106056661
          Length = 680

 Score =  476 bits (246), Expect = e-139
 Identities = 255/258 (98%)
 Strand = Plus / Minus

                                                                       
Query: 23  gagtcaggaagtattgcgtaatggttagagatgttagctttggggcccaagtgggttcgg 82
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 575 gagtcaggaagtattgcgtaatggttagagatgtgagctttggggcccaagtgggttcgg 516

                                                                       
Query: 83  aacctggttctgtcactcactaaatgggtgaccttatttctccctgcctcggttggcacg 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 aacctggttctgtcactcactaaatgggtgaccttatttctccctgcctcggttggcacg 456

                                                                       
Query: 143 gtttcaaagtggtgaccagagtactcctgtcaagggctctttaacttttgttgcttgatt 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gtttcaaagtggtgaccagagtactcctgtcaagggctctttaacttttgttgcttgatt 396

                                                                       
Query: 203 tacatcccctaatgtgaacattacatatcctggatatttgttttatttgcaagctttcag 262
           || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 395 taaatcccctaatgtgaacattacatatcctggatatttgttttagttgcaagctttcag 336

                             
Query: 263 actacagtttgctcattt 280
           ||||||||||||||||||
Sbjct: 335 actacagtttgctcattt 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)