BAC Information

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BAC

Clone NameMSMg01-295P05
Chromosome12 (Build37)
Map Location 10,519,776 - 10,731,423
singlet/doubletdoublet
Overlap geneLOC238074
Upstream geneOsr1, LOC382567, Nt5c1b, Rdh14
Downstream geneLOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550, LOC217390
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295P05.T7 (MSMg01no295_p05.b1)MSMg01-295P05.TJ (MSMg01no295_p05.g1)
ACCAG423697AG423698
length745759
length of high quality
(start - end)
244 (127 - 370)251 (74 - 324)
definitionCHROMAT_FILE: MSMg01no295_p05.b1 PHD_FILE: MSMg01no295_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:01 2005CHROMAT_FILE: MSMg01no295_p05.g1 PHD_FILE: MSMg01no295_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(10,519,776 - 10,520,019)(10,731,173 - 10,731,423)
sequence
TCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTGAAAGATACATTCTTCAAACCTGGTGAAGAAAGTGACATGCA
TGTGTGATATTTCAGATGTTACCCCTCATGAGATAAAGAGTAAGACGATA
TGCCAGAGGGTAAGTCTGTTTTGAGTGGGGAAAAAAAAATGAAGCAATCA
TTTGCAGACCAGAAGGAAGGACTTTGTCAGCGCTCTCAGTTTCGCAAAAA
TTTGATTGCTTTTCCCTTGCAAGTGCAAGGGGAATTGCATCTGTCTTCTT
GAAATGGGAGAGCCATCTGATTATAAATATGAGAACAAACAACAAGTGCT
GTCTTTTTAATTATTTTTTTACATCCCCCCCCCCCTGAGGTGAAATTATC
TCGTCTCTCTTCATTTCCCCCCCCCCACAAAGATAAAAGGACAGACTTTG
CATTTGTCTGGCTCCTGTCCACGGCTAGGGTATCCTCTCATTTGTGTCGA
ATATGCCCTATGAAAACTAAATTGCACCCTTTTTAACTCCAGTCTCATAT
TAATGACTAGTTTGCTATTATGTCTTAATTCACAACTGTTTTCTCAAACG
GTTATATCCAGGCCTCGAGATTTCTTCTACAAATGATTATTTCCCCTTGC
TCATAACTCATTAGCCATAGTCCCCTAACGTAGTTAATACTCTTCCTTGG
ACATATCTCTTCTATTTTATTTCTAAGTGTTCTTTGAGGCCTCTT
TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGCAGAACGGTCACGTGGTGGCTAGC
CATGAAAATGGTGGCTTCGGCAGAGAGTGGTGCTTCGGGTGGCGGAGGCA
GCAGAGAGGAGGCATTTATGACCTTCTACAGTGAGGTGAAACAAATAGAG
AAGAGAGATTCAGTTCTAACATCCAAAAATCAAATCGAAAGATTGACTCG
TCCTGGTTCCTCTTACTTTAATCCGAACCCATTTGAGGTTCTTCAGATAG
ATCCTGAAGTGACAGATGAAGAAATAATAAAAAGAGAATTCGTCAGTTGT
CCATCTTGGTGCTTCCTGACACCCACCACCCACGATGCTGACAGAGCAAA
GAAGGCTTTTGAAGCCCCCCCCCCAAGCTTACAAGTTGCTACTGGATTAG
GAATAAAAGAAGAGGGTCCTGGATGTAATTCAGGCTAGAAAAGAATACGT
GGAACAACACACTGTTATAGAGCGATACTAGACCCATTTCTACTTCATCT
ACTTCTTCCACCATTTGACCAATGTACGATCACCCACCTGATGTGTGTGC
AAGACGATTCCCGACTTGTTCTTATCGCGTTGATTTTCATTCGGAACCAT
GCTCGTTTTTTTGCTGTATTTTCGTGATTTGCCCGTGATTTCACCCGTTT
CTCTCTTTCCCCCTGCTTTTTCCTAGTCACCCTCCTCGATTTGTAAGATG
GTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_p05.b1 MSMg01no295_p05.b1 CHROMAT_FILE:
MSMg01no295_p05.b1 PHD_FILE: MSMg01no295_p05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:01 2005
         (244 letters)



>mm_chr12_10519576_10520219
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgagataaagagtaagacgatatgccagagggtaagtctgttttgagtggggaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgagataaagagtaagacgatatgccagagggtaagtctgttttgagtggggaaaaaa 260

                                                                       
Query: 61  aaatgaagcaatcatttgcagaccagaaggaaggactttgtcagcgctctcagtttcgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatgaagcaatcatttgcagaccagaaggaaggactttgtcagcgctctcagtttcgca 320

                                                                       
Query: 121 aaaatttgattgcttttcccttgcaagtgcaaggggaattgcatctgtcttcttgaaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaatttgattgcttttcccttgcaagtgcaaggggaattgcatctgtcttcttgaaatg 380

                                                                       
Query: 181 ggagagccatctgattataaatatgagaacaaacaacaagtgctgtctttttaattattt 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 ggagagccatctgattataaatatgagaacaaacaacaagtgttgtctttttaattattt 440

               
Query: 241 tttt 244
           ||||
Sbjct: 441 tttt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no295_p05.g1 MSMg01no295_p05.g1 CHROMAT_FILE:
MSMg01no295_p05.g1 PHD_FILE: MSMg01no295_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:01 2005
         (251 letters)



>mm_chr12_10730973_10731623
          Length = 651

 Score =  424 bits (219), Expect = e-123
 Identities = 243/251 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcagaacggtcacgtggtggctagccatgaaaatggtggcttcggcagagagtggtgc 60
           ||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||
Sbjct: 451 aggcagaacggtcacgtgggggctagccatgaaaatggcggcttcgggagagagtggtgc 392

                                                                       
Query: 61  ttcgggtggcggaggcagcagagaggaggcatttatgaccttctacagtgaggtgaaaca 120
            ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||
Sbjct: 391 ctcgggtggcggaggcagcacagaggaggcatttgtgaccttctacactgaggtgaaaca 332

                                                                       
Query: 121 aatagagaagagagattcagttctaacatccaaaaatcaaatcgaaagattgactcgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aatagagaagagagattcagttctaacatccaaaaatcaaatcgaaagattgactcgtcc 272

                                                                       
Query: 181 tggttcctcttactttaatccgaacccatttgaggttcttcagatagatcctgaagtgac 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggttcctcttactttaatctgaacccatttgaggttcttcagatagatcctgaagtgac 212

                      
Query: 241 agatgaagaaa 251
           |||||||||||
Sbjct: 211 agatgaagaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)