BAC Information

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BAC

Clone NameMSMg01-295P08
Chromosome12 (Build37)
Map Location 100,068,222 - 100,068,425
singlet/doubletsinglet
Overlap geneEml5
Upstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
Downstream geneLOC100039845, Ttc8, EG667779, Ches1, LOC100039892, 2610021K21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295P08.T7 (MSMg01no295_p08.b1)MSMg01-295P08.TJ (MSMg01no295_p08.g1)
ACCAG423703AG423704
length809770
length of high quality
(start - end)
51 (49 - 99)205 (72 - 276)
definitionCHROMAT_FILE: MSMg01no295_p08.b1 PHD_FILE: MSMg01no295_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:01 2005CHROMAT_FILE: MSMg01no295_p08.g1 PHD_FILE: MSMg01no295_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGNCATT
CCTTTATTACNACTTCTGTATGTATTTTATAGAGTTCNNNATACTTCCNA
ACATGCAGGTTACCTAATATCAAGCTTTANNCCCNACAAATCANTACCTC
TCCTTCCGTATCCCCTTGCNCATATAAACCAGGCCTGATTTATAACTCTT
TTGTGCTCCANTCTTATAACCCCCTTTTTACTTACNTGTACATGTGCTGA
NAANATGCTTTGCTCCTCTAANTACTTTCTTTTCCCNCNCCCATCATTCT
CTTTTCCCCCCCTTCCCCTTTTTCCTACTCCCCNNCGCTCCCCCCGCTCC
AGANNNTTTTTCTTTTTTCCCCCCCCCCCCCCCCCCCTGTTTATTTATTC
TTTCTCTTCTGTTCCCCCCCCCCAGAAAAGAAAAAAAAACAAAAGAAAAA
AAAAAAAANNTNTTTTCNCNCATCTTCTTTTAGAAAAAAAAAAAAAACAA
AAAAAAANCTCTTCTTTCTCTTTCNCCGGGTTTTCCTTCTTCCTNCCCCC
CTCNCNCCCTCTGGTGGGGGAGTTTCCTCTTNTTTCCNCCTCNNNTNCTT
CCCCTTCCCCTCCCTTTCCTCGCGCGAAAGAAAATTTCTTTNTCCTTTTC
CTTCCCTTTTTTTTCCCTTCTTCCCCTCCCCCTTTTCCCTTCCCTTCTCT
CCTCTCTTCCCCCCCCTTCCCCTTCCTCTTTCCTTCCCTTCCTTCTCCTT
TTCCTTTCCTTCTCCTTCTTTCCTTTCCTTTTCTCATCACCCCCATTACA
TTAGCTAAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAGGCAAACCTGTGGGATTTAGCAAGACC
CTGTCTGAAAGTGAATAATACCAAATGGGCAGGGCCATAGCTCAGTGGTA
AGGGCACTTGCGTGGCATGTGCAAAGGCAGCTTTCTCTATGGTGAATGTA
TTAACACCATTGCACTCTCTTACTCTCTATCTAATTAAATAATTTCATGC
AGGAAAGGCTTCTTTTTTTTTTTTTTTCTTTTTTTTTTTGGGCTTTCACG
ACCGGGCTTCTCTGCGCACTCCTGGCCATCCTGGAATACTCTCTGTACAC
CCAGCTTTTTCTGATTTTCCCCCCCCCCCCCGCCTTTGGCTCCCACGAGT
CGGGAATTAACCCCCCCCCACAAAAAAAAAAAAAAAAATTCGGGTGGGTG
TGCCTTCCCTTCCATTACCTGTTTCTTTCTTCGTTCAAGAATCTCGAAAT
TCTTCATCTCCCCGACATACTTGCATCGTTTAATCCTTACATATACCCTT
TTCATCTAACCCCATTCCAAATCCCTCATTATCCTTTCATCCAATTACAT
TCACGTTTCCGTACAGTTCCCCCGTTAACCATCCTTTTTCCTTCTTATCT
ATTCCCTTAAATTACCCAAAAACCCCCCATAACCACATCCCTCTTTATCC
CTATAATCGCTCCTTCTTCCCCTTTATTTCCCCCCTTTCCCCCCTTCCCA
TCCCCTTTCTACCCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_p08.g1 MSMg01no295_p08.g1 CHROMAT_FILE:
MSMg01no295_p08.g1 PHD_FILE: MSMg01no295_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:01 2005
         (205 letters)



>mm_chr12_100068022_100068626
          Length = 605

 Score =  342 bits (177), Expect = 7e-99
 Identities = 198/205 (96%), Gaps = 1/205 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggcaaacctgtgggatttagcaagaccctgtctgaaagtgaataataccaaatgggca 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||
Sbjct: 201 aaggcaaacctgtgggatttagcaagaccctgtctgaaagtgaaaaataagaaatgggca 260

                                                                       
Query: 61  gggccatagctcagtggtaagggcacttgcgtggcatgtgcaaaggcagctttctctatg 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 gggccatagctcagtggtaagggcacttgtgtggcatgtgcaaaggcagctttctctatg 320

                                                                       
Query: 121 gtgaatgtattaacaccattgcactctcttactctctatctaattaaataatttcatgca 180
           ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 321 gtgaatgtattaacaccattgcactctcttagtctctatttaattaaataatttcatgca 380

                                    
Query: 181 ggaaaggcttctttttttttttttt 205
           |||||||||| ||||||||||||||
Sbjct: 381 ggaaaggctt-tttttttttttttt 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)