Query= MSMg01no296_n20.b1 MSMg01no296_n20.b1 CHROMAT_FILE:
MSMg01no296_n20.b1 PHD_FILE: MSMg01no296_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:10 2005
(670 letters)
>mm_chr12_32832038_32833107
Length = 1070
Score = 1265 bits (654), Expect = 0.0
Identities = 663/666 (99%)
Strand = Plus / Plus
Query: 5 gaattcttttatggcttaaatcttaaaatatctcccacaggcttatgttttgaatgctta 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttatggtttaaatcttaaaatatctcccacaggcttatgttttgaatgctta 264
Query: 65 gccctcagcttctggcttattttgaaacctgtggagcttttagaaggcatgatctggcca 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 265 gccctcagcttctggcttattttgaaacctgtggagcttttagaaggcaggatctggcca 324
Query: 125 gtggaagcaggtctttggttctggcctttccattgcttcctggtatagccatcatatgag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtggaagcaggtctttggttctggcctttccattgcttcctggtatagccatcatatgag 384
Query: 185 ggatctggctatacgctcctgttgccttgggttgagctgtcctgttgccatgacttcacc 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggacctggctatacgctcctgttgccttgggttgagctgtcctgttgccatgacttcacc 444
Query: 245 tctgggatgggtggaaatccaaaaaaaccgttagtctaaaacaatcccattttcacttaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctgggatgggtggaaatccaaaaaaaccgttagtctaaaacaatcccattttcacttaa 504
Query: 305 actacttctgttaggcacttggtcacagtgacacaaatgttatcaacacaaccccaacta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 actacttctgttaggcacttggtcacagtgacacaaatgttatcaacacaaccccaacta 564
Query: 365 aagagagacatacaactgtccttagctgttgttggcagggcaggccaccaattcactttc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagagagacatacaactgtccttagctgttgttggcagggcaggccaccaattcactttc 624
Query: 425 tcgataaagatgatcctgaaattctgatcctcccgattttacctcccaagtactggaatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcgataaagatgatcctgaaattctgatcctcccgattttacctcccaagtactggaatt 684
Query: 485 ataggcatgcaccaccacacccagcttgtgtttggctttttggaacagggtcttactatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataggcatgcaccaccacacccagcttgtgtttggctttttggaacagggtcttactatg 744
Query: 545 tagtccaagctagtctcaaacctcataatcctcctgccttcacctcctaagcattgggat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tagtccaagctagtctcaaacctcataatcctcctgccttcacctcctaagcattgggat 804
Query: 605 tacagacaggcatgccttctattcttttctactatagacccttccaccccagatctgccc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tacagacaggcatgccttctattcttttctactatagacccttccaccccagatctgccc 864
Query: 665 tctcag 670
||||||
Sbjct: 865 tctcag 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_n20.g1 MSMg01no296_n20.g1 CHROMAT_FILE:
MSMg01no296_n20.g1 PHD_FILE: MSMg01no296_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:10 2005
(556 letters)
>mm_chr12_32857653_32858609
Length = 957
Score = 967 bits (500), Expect = 0.0
Identities = 542/556 (97%), Gaps = 5/556 (0%)
Strand = Plus / Minus
Query: 1 tatagcatgatttggaagctgttagtcctatattaatgacaattgaatataatcttaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 tatagcatgatttggaagctgttagtcctatattaatgacaattgaatataatcttaaat 695
Query: 61 taaaaaattagaaaaaacatttctgaaatcatcagcaattatgtttaacaacgtgaagaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaaaaaattagaaaaaacatttctgaaatcatcagcaattatgtttaacaacgtgaagaa 635
Query: 121 aataaaatgagctaggatttcttaatgattctgtagacttatttccatctttatccaacc 180
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 634 aataaaatgagctaggatttcttaatgattgtgtaggcttatttccatctttatccaact 575
Query: 181 gaataattcttgtgagcacatttgattctagtcttagtgcttgttcacatgttctcaaag 240
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 574 gaataattcttctgagcacatttgattctagccttagtgcttgttcacatgttctcaaag 515
Query: 241 gctcatttaaggacagatgccagggaactctaaagcacagcgtggttagccctactggaa 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 514 gctcatttaaggacagatgccagggaactctaaagcacagcgtggctagccctactggaa 455
Query: 301 gctaagatggtctcctgtg-ttttaattacaaatgttaatttaaattg-aaaaaaaaaag 358
||||||| ||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 454 gctaagacggtctcctg-gattttaattacaaatgttaatttaaattgaaaaaaaaaaag 396
Query: 359 -aatttgacatcttgtgtatcttttaatgtttaaacttccaaatgtttctgaaactcatt 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 aaatttgacatcttgtgtatcttttaatgtttaaacttccaaatgtttctgaaactcatt 336
Query: 418 ttgaaactgaaacttattttaagaaatcgttattgaatgctcattgcctacgagaaactg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttgaaactgaaacttattttaagaaatcgttattgaatgctcattgcctacgagaaactg 276
Query: 478 cacagtgtgccgaggaattgaggacgcaacaaaatggactgagtcccagttcctactcgt 537
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 275 cacagtgtgccgaggaattgaggacgcaacaagatggactgagtcccagttcctactcgt 216
Query: 538 gtgntgtgtgtgtgtg 553
||| ||||||||||||
Sbjct: 215 gtg-tgtgtgtgtgtg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
