Query= MSMg01no297_b05.b1 MSMg01no297_b05.b1 CHROMAT_FILE:
MSMg01no297_b05.b1 PHD_FILE: MSMg01no297_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:26 2005
(568 letters)
>mm_chr12_108723314_108724281
Length = 968
Score = 994 bits (514), Expect = 0.0
Identities = 556/578 (96%), Gaps = 14/578 (2%)
Strand = Plus / Plus
Query: 5 gaattccttgagcctatacgattcaaaaaaagaaattaactttcctggaggtctgtttgg 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gaattccttgagcctataggattcaaaaaaagaaattaactttcctggaggtctgtttgg 250
Query: 65 ccagctgcaaacagaacacacccagaaggagaaagctatacttagaagttcttaatttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccagctgcaaacagaacacacccagaaggagaaagctatacttagaagttcttaatttca 310
Query: 125 acagggtccaggtgagcctgtgtctgcgtgccctctgccaaacgtctctcaaaggggagc 184
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 311 acagggtccaggtgagcctgtgtctgcgtgccctctgccaaacttctctcaaaggggagc 370
Query: 185 catgggatgtccctgtggtcaggaagacacttatgatataacctccgaggatgaaagcca 244
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 371 catgggatgtccctgtggtcaggaagacacttctgatataacctccgaggatgaaagcca 430
Query: 245 gttggttatcacttgtctgaaattcttgagatcagaaatattttatacttcagaacagtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttggttatcacttgtctgaaattcttgagatcagaaatattttatacttcagaacagtt 490
Query: 305 gcttattataatcagaggtcttagagatgggacccaaatccagacaggaactacacacac 364
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 491 gcttattataatcagaggtcttagagatgggacccaagtctagacaggaactacacacac 550
Query: 365 acacacacacacacacacacacacacacaca-ac-------------taaaggccatctt 410
||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 551 acacacacacacacacacacacacacacacacacacacacacatagctaaaggccatctt 610
Query: 411 acatgcttgccttcttgatttattttcctttttctttataaagtttaaatctattctttg 470
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 611 acatgcctgccttcttgatttattttccttttactttataaagtttaaatctattctttg 670
Query: 471 ataatttcgtgcaagttttattgtaaataataccaagtccttagtctcttccccacccac 530
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gtaatttcgtgcaagttttattgtaaataataccaagtccttagtctcttccccacccac 730
Query: 531 cttcccagcttcatgtcttttcaaacctacctataacc 568
||||||||||||||||||||||||||||||||||||||
Sbjct: 731 cttcccagcttcatgtcttttcaaacctacctataacc 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_b05.g1 MSMg01no297_b05.g1 CHROMAT_FILE:
MSMg01no297_b05.g1 PHD_FILE: MSMg01no297_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:26 2005
(395 letters)
>mm_chr12_108891171_108891965
Length = 795
Score = 756 bits (391), Expect = 0.0
Identities = 394/395 (99%)
Strand = Plus / Minus
Query: 1 ctgtgtccgcatggctctcactctgaagtgcttgccttcttggagtctcatggaccagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctgtgtccgcatggctctcactctgaagtgcttgccttcttggagtctcatggaccagct 536
Query: 61 gccagacccctgctgtggggaggtcggttctgagagatctaacgcaagtccagtcctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gccagacccctgctgtggggaggtcggttctgagagatctaacgcaagtccagtcctccc 476
Query: 121 cgcccctcccctccccaccctggcccattccaggagggtgggcagtgtctggtgggagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cgcccctcccctccccaccctggcccattccaggagggtgggcagtgtctggtgggagga 416
Query: 181 ggctggtggaggctgcctgcgttgcactgtgtcttagggctgacgccatggctgggccgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ggctggtggaggctgcctgcgttgcactgtgtcttagggctgacgccatggctgggccgc 356
Query: 241 cactgtctctgcccagtttcctgcgtctggatgggtctgaggttgcaagtggtttcctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cactgtctctgcccagtttcctgcgtctggatgggtctgaggttgcaagtggtttcctgt 296
Query: 301 ttctctgtatctcaggactggcctaattggaaagacatgtcagactgatgtgtccagcat 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttccctgtatctcaggactggcctaattggaaagacatgtcagactgatgtgtccagcat 236
Query: 361 gctggaggagaaaagggggaggaggtgaagaggaa 395
|||||||||||||||||||||||||||||||||||
Sbjct: 235 gctggaggagaaaagggggaggaggtgaagaggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space: 303396
Effective search space used: 303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
