BAC Information

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BAC

Clone NameMSMg01-297E15
Chromosome12 (Build37)
Map Location 40,947,374 - 40,947,949
singlet/doubletsinglet
Overlap geneIfrd1
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889
Downstream geneEG629820, Zfp277, Dock4, LOC638487, LOC100043157, LOC100043162
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297E15.T7 (MSMg01no297_e15.b1)MSMg01-297E15.TJ (MSMg01no297_e15.g1)
ACCAG424665AG424666
length725737
length of high quality
(start - end)
237 (51 - 287)576 (77 - 652)
definitionCHROMAT_FILE: MSMg01no297_e15.b1 PHD_FILE: MSMg01no297_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:42 2005CHROMAT_FILE: MSMg01no297_e15.g1 PHD_FILE: MSMg01no297_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCACTAATAGGTACAAGACAAGCGGAATTCCAAGAAATTATTTCGACCT
TGGGCAAGTAGAGCTTACAGATTAGGTGCATTTTTGTTTATAAATCTCTT
AAACACGGTAGTTTAAACTTAAAACATTAGCATCACAACACTTGTCTGCA
TTTTGTCCCTGTTATGACACTTTTGGGAGAATAAAGTTAGAGGAAACAGG
TGGAGGAAATTCAAAGGCAGCTAGCATTCTGCCTGTATCATGGTTTTTGC
TAGCTTCTTTTATTCACATATACAGTGAAAATTGTGACCAAAATCCTTTA
TTTTAATGAAAAACATATAGTTCGGTCAGAAAACATTATATAAATTTAAA
CTTAATGCTTGCATGTTTTCTGAACATACTGCCATTAATAGGAAACAAAG
TACTTCGAATCATATAATATAAAAATTTTATCAAGGACATCTCACGTATT
ATCAGTAAGACACACCCATCCCCGGCCCAAGTGTTTTTGCCATTATTGGC
TATGAGATTTTTTTGCTATGTTATTTTCTTTCTCACAAAGCTCTACCACT
AACCCTCCTACCCTTTTTCTTTTGTACTGCTATTTTTTCCCGAGAAGTTT
GTGTGACGTGCGTGTGCGAAGCGTGCCCTTTCTCGACTTTTGCCGTATGT
TCGCCATATCTTTCATAAACCATATTTTTTCCGCTTTTGTCACCCTTTTT
AATCCGGAACTTTTTATTTTTTGTT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCGCACATCCAGAGCAGGCTACAGACTGAGACTGT
CATAATAAACAAAATGAGAAAAACAAAAAAGAAAACACAAAACGTGAAAA
TCCACTCCTCAGATCAGAACACTGCTGTGTAAACTTATCCATGCATGTGA
GATCAATTTTCTTGGTTTCCTACAATTCTCCAATTACTTACAAAGAATAT
AAATAAAAATCCAAGACCCTAGAGATTCACTTAAATCAGATTTATTCTCC
CTGTCATCCAAACTTCAATAGAAAAAGTGGTTTCTAAGTAAAATTTTTGC
TAATTTCCTTTCGGACTCAACTATTTAGGAAGTAAAACACACGTGGCTCA
AGTAGAAAATTACAGAAAACCATTCTCATCCAGTCCCACTTGCTAGAGGT
AGCTTTTATGGTAACAACATCAAAGCTTGCAGTTTCAACAACCAAATCAA
TTACTTTCCTTTTATAGATGCTTCAAGTGTTTACATTACATATGCTAAAA
TGCAGTGTTTAAGCTCGTATCTTTTCTATGAAAAAGAATTTAAAAGACAG
CACTGATGCAGTCTGATGGCAGGTCAATACACCTTGAGGCAAAATGTGTC
TGTCCTAACAAAAGAACAATACTTGTCAGGAAACTACCGAAAGGAAGGGT
GTCTGTGAGGTGGAGACCTCTGTTAACATCTGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_e15.g1 MSMg01no297_e15.g1 CHROMAT_FILE:
MSMg01no297_e15.g1 PHD_FILE: MSMg01no297_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:42 2005
         (576 letters)



>mm_chr12_40947174_40948149
          Length = 976

 Score = 1060 bits (548), Expect = 0.0
 Identities = 569/576 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagcaggctacagactgagactgtcataataaacaaaatgagaaaaacaaaaaagaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcaggctacagactgagactgtcataataaacaaaatgagaaaaacaaaaaagaaaac 260

                                                                       
Query: 61  acaaaacgtgaaaatccactcctcagatcagaacactgctgtgtaaacttatccatgcat 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataaaacgtgaaaatccactcctcagatcagaacactgctgtgtaaacttatccatgcat 320

                                                                       
Query: 121 gtgagatcaattttcttggtttcctacaattctccaattacttacaaagaatataaataa 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gtgagatcaattttcttggtttcctacaactctccaattacttacaaagaatataaataa 380

                                                                       
Query: 181 aaatccaagaccctagagattcacttaaatcagatttattctccctgtcatccaaacttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatccaagaccctagagattcacttaaatcagatttattctccctgtcatccaaacttc 440

                                                                       
Query: 241 aatagaaaaagtggtttctaagtaaaatttttgctaatttcctttcggactcaactattt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 aatagaaaaagtggtttctaagtaaaatttttgctaacttcctttcggactcaactattt 500

                                                                       
Query: 301 aggaagtaaaacacacgtggctcaagtagaaaattacagaaaaccattctcatccagtcc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 aggaagtaaaacacacgtggctcaagtagaaaattacagaaaagcattctcatccagtcc 560

                                                                       
Query: 361 cacttgctagaggtagcttttatggtaacaacatcaaagcttgcagtttcaacaaccaaa 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 cacttgctagaggtagcttttatggtaacaatatcaaagcttgcagtttcaacaaccaaa 620

                                                                       
Query: 421 tcaattactttccttttatagatgcttcaagtgtttacattacatatgctaaaatgcagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaattactttccttttatagatgcttcaagtgtttacattacatatgctaaaatgcagt 680

                                                                       
Query: 481 gtttaagctcgtatcttttctatgaaaaagaatttaaaagacagcactgatgcagtctga 540
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtttaaactcgtatcttttctatgaaaaagaatttaaaagacagcactgatgcagtctga 740

                                               
Query: 541 tggcaggtcaatacaccttgaggcaaaatgtgtctg 576
            |||||||||||||||||||||||||||||||||||
Sbjct: 741 gggcaggtcaatacaccttgaggcaaaatgtgtctg 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)