BAC Information

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BAC

Clone NameMSMg01-298E09
Chromosome12 (Build37)
Map Location 77,814,147 - 77,996,848
singlet/doubletdoublet
Overlap geneChurc1, Gpx2, Rab15, Fntb
Upstream geneSgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1
Downstream geneMax, LOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298E09.T7 (MSMg01no298_e09.b1)MSMg01-298E09.TJ (MSMg01no298_e09.g1)
ACCAG425370AG425371
length695711
length of high quality
(start - end)
452 (43 - 494)249 (53 - 301)
definitionCHROMAT_FILE: MSMg01no298_e09.b1 PHD_FILE: MSMg01no298_e09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:55 2005CHROMAT_FILE: MSMg01no298_e09.g1 PHD_FILE: MSMg01no298_e09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,814,147 - 77,814,598)(77,996,600 - 77,996,848)
sequence
CCTATTCAAAACGGAGGCGCGGAATTCATGATATTACCACGAACTATACC
CTTTAACTGAGCTCCAGTCCAGGAAAGGAAACCGAATTTTCCTTCCCATG
TCTGGGATTACCTAAGGGTGCCACTTCCTTCTCAGTGTGCAGACAAGAGA
GAAGCAGTAAGGCTAATTTCTCAAGCACACCACTGAGAACCAGGAGGGGC
TGAGGACTGGGGCTCAACCCTTTGCCCTCATGCCTCAGACTCCTAACGGC
TCCCCCATCCTCCCATTTTTGTTCTCTTTCGATTCTTTTTCCTCGTAGCA
GCCAAATTCTACTCTAAGAAGGAAATCTGATCGTGCCACTCGGTTACATT
AAATCACCCGTGGCTTCCCAATACTTTCAGGATACAGTGCTAAGCACTTA
GCACATGAGACAAAATCAGTAAAGATAAAATGAGTGAATAAGTGAACAAA
TCAGGAATTAAATGAGGTTGCAATCTTGGAGGCCAACCTGAGAAGTCTAT
AAAAATCTTTTTTTCCCTCTGGGTTATAGATACATTATATGTAACTTGTT
TGTCTGCCTGTCTGTTTGTTTGCTTGTTTGTTTGTATGTTTGTTTGCTCG
ACACAGGGTTTCCCTGTATAGCCCTGTCTGTCCTGTACCTCACTTTGTAA
ACCAGGTTGGCCTCGAATTCTAAATCCAGCCTGTCTCTGCCTCCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGC
GAAATTCTGTCCTCCAGGGTGTGACGTGGCTGCTACAGTCTTGAAATCAG
AGCAGTTGTGATGACTTCAATAGATCCTCACAAGATAGTGTCTATTAATA
TTCCTGTGTAGGAGGAGGGTGGGGGCGGGGCATCAGACCCTTATTGGAGA
CACTGGCCACTCCTTTTCTGAAACCTGCTTCCCCACTAGGTGTATGTAAT
CCTGACCTGAGCTGTACGTGGTCTTAGGTGCTAGAGAGTATGTAGGAGGT
ATATTGTATTGCTTGGGGTGAGGATCTGAATAAAGCAGCTATCATGACTA
AACTGTTTCTTTGGCCTGTTATTTTCCAATCTACTGAGGGTGAACAGAAA
TTCGCCTCCTAGGACAAGACAATCAGCAACTAGTGGCCGGGCAGGGGATG
AATGGAACCAGAGATGAGTTGAGGGCAGCACAGTTACATGGCCTCTGCTA
AAGGAGATGGTCTAGCATCTGAGGCTGAGCCATCTGAGGGGAGAGCATCC
AGGGGGTGCTCCAATGTGGCCTTCTTTCCCCATGTGGTCTGGATAAGTAT
GTCTCCATGCTGCAACAGCAAGTGAAGGCTCCCCTATAATTGATGTTAGA
TATGAATCACACCCTGATTTGTCTAACCCCCTGTTCTGCCTTGTATATTC
CAGGTAATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_e09.b1 MSMg01no298_e09.b1 CHROMAT_FILE:
MSMg01no298_e09.b1 PHD_FILE: MSMg01no298_e09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:55 2005
         (452 letters)



>mm_chr12_77813947_77814798
          Length = 852

 Score =  859 bits (444), Expect = 0.0
 Identities = 450/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actataccctttaactgagctccagtccaggaaaggaaaccgaattttccttcccatgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actataccctttaactgagctccagtccaggaaaggaaaccgaattttccttcccatgtc 260

                                                                       
Query: 61  tgggattacctaagggtgccacttccttctcagtgtgcagacaagagagaagcagtaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattacctaagggtgccacttccttctcagtgtgcagacaagagagaagcagtaagg 320

                                                                       
Query: 121 ctaatttctcaagcacaccactgagaaccaggaggggctgaggactggggctcaaccctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaatttctcaagcacaccactgagaaccaggaggggctgaggactggggctcaaccctt 380

                                                                       
Query: 181 tgccctcatgcctcagactcctaacggctcccccatcctcccatttttgttctctttcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccctcatgcctcagactcctaacggctcccccatcctcccatttttgttctctttcga 440

                                                                       
Query: 241 ttctttttcctcgtagcagccaaattctactctaagaaggaaatctgatcgtgccactcg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttctttttccacgtagcagccaaattctactctaagaaggaaatctgattgtgccactcg 500

                                                                       
Query: 301 gttacattaaatcacccgtggcttcccaatactttcaggatacagtgctaagcacttagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttacattaaatcacccgtggcttcccaatactttcaggatacagtgctaagcacttagc 560

                                                                       
Query: 361 acatgagacaaaatcagtaaagataaaatgagtgaataagtgaacaaatcaggaattaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatgagacaaaatcagtaaagataaaatgagtgaataagtgaacaaatcaggaattaaa 620

                                           
Query: 421 tgaggttgcaatcttggaggccaacctgagaa 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 tgaggttgcaatcttggaggccaacctgagaa 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no298_e09.g1 MSMg01no298_e09.g1 CHROMAT_FILE:
MSMg01no298_e09.g1 PHD_FILE: MSMg01no298_e09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:55 2005
         (249 letters)



>mm_chr12_77996400_77997048
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattctgtcctccagggtgtgacgtggctgctacagtcttgaaatcagagcagttgtgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aattctgtcctccagggtgtgacgtggctgctacagtcttgaaatcagagcagttgtgat 390

                                                                       
Query: 61  gacttcaatagatcctcacaagatagtgtctattaatattcctgtgtaggaggagggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gacttcaatagatcctcacaagatagtgtctattaatattcctgtgtaggaggagggtgg 330

                                                                       
Query: 121 gggcggggcatcagacccttattggagacactggccactccttttctgaaacctgcttcc 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 329 gggcggggcatcagacccttattggagacactggccacttcttttctgaaacctgcttcc 270

                                                                       
Query: 181 ccactaggtgtatgtaatcctgacctgagctgtacgtggtcttaggtgctagagagtatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ccactaggtgtatgtaatcctgacctgagctgtacgtggtcttaggtgctagagagtatg 210

                    
Query: 241 taggaggta 249
           |||||||||
Sbjct: 209 taggaggta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)