MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-301N10
Chromosome	12 (Build37)
Map Location	73,893,141 - 73,893,439
singlet/doublet	singlet
Overlap gene	Ppm1a
Upstream gene	Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik
Downstream gene	Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch
Link	Open Mouse BAC browser

Click to get alignment info.

name	Daam1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208846 MGI:1914596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC666213 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 13 ESTs, 7 Proteins pseudo : _no_value

name	LOC666220 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins pseudo : _no_value

name	Gpr135 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238252 MGI:2676315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041239 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	2810055F11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67217 MGI:1914467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1200003C05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104771 MGI:1915057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930403N07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73936 MGI:1921186
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 1 Protein

name	Rtn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104001 MGI:1933947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Lrrc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78257 MGI:1925507
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810048J11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67708 MGI:1914958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC209183 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:209183
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100041323 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041323
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Dhrs7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66375 MGI:1913625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041157 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041157
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	5033425G24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75998 MGI:1923248
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ppm1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19042 MGI:99878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Six6os1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75801 MGI:1923051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Six6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20476 MGI:1341840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041234 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041234
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Six1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20471 MGI:102780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Six4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20474 MGI:106034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mnat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17420 MGI:106207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trmt5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76357 MGI:1923607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc38a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625098 MGI:3648156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins

name	EG666356 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666356 MGI:3646560
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tmem30b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238257 MGI:2442082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2210039B01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73644 MGI:1920894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Prkch (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18755 MGI:97600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Daam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78191776 GeneID:208846 MGI:1914596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dishevelled associated activator of morphogenesis 1 transcript_id : NM_026102.2

name	Daam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78191778 GeneID:208846 MGI:1914596
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dishevelled associated activator of morphogenesis 1 transcript_id : NM_172464.2

name	Gpr135 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32306523 GeneID:238252 MGI:2676315
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 135 transcript_id : NM_181752.1

name	LOC100041239 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263300 GeneID:100041239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : hypothetical protein LOC100041239 transcript_id : XM_001476062.1

name	2810055F11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803478 GeneID:67217 MGI:1914467
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810055F11 gene transcript_id : NM_026038.2

name	1200003C05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21312773 GeneID:104771 MGI:1915057
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1200003C05 gene transcript_id : NM_024205.1

name	4930403N07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263293 GeneID:73936 MGI:1921186
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 20 ESTs, 1 Protein product : RIKEN cDNA 4930403N07 gene transcript_id : XM_982478.2

name	Rtn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56090142 GeneID:104001 MGI:1933947
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 1 transcript_id : NM_153457.6

name	Rtn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56090140 GeneID:104001 MGI:1933947
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 1 transcript_id : NM_001007596.1

name	Lrrc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353356 GeneID:78257 MGI:1925507
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 9 transcript_id : NM_030070.2

name	1810048J11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430538 GeneID:67708 MGI:1914958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810048J11 gene transcript_id : NM_026327.3

name	Dhrs7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801865 GeneID:66375 MGI:1913625
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dehydrogenase/reductase (SDR family) member 7 transcript_id : NM_025522.2

name	5033425G24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263295 GeneID:75998 MGI:1923248
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 5033425G24 gene transcript_id : XM_001475910.1

name	Ppm1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560649 GeneID:19042 MGI:99878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1A, magnesium dependent, alpha isoform transcript_id : NM_008910.2

name	Six6os1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802018 GeneID:75801 MGI:1923051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Six6 opposite strand transcript 1 transcript_id : NM_029444.2

name	Six6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801322 GeneID:20476 MGI:1341840
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 6 homolog (Drosophila) transcript_id : NM_011384.3

name	Six1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802854 GeneID:20471 MGI:102780
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 1 homolog (Drosophila) transcript_id : NM_009189.2

name	Six4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130178 GeneID:20474 MGI:106034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 4 homolog (Drosophila) transcript_id : NM_011382.2

name	Mnat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89363037 GeneID:17420 MGI:106207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : menage a trois 1 transcript_id : NM_008612.2

name	Trmt5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981335 GeneID:76357 MGI:1923607
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) transcript_id : NM_029580.2

name	Slc38a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392951 GeneID:625098 MGI:3648156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins product : solute carrier family 38, member 6 transcript_id : XM_983207.1

name	EG666356 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392953 GeneID:666356 MGI:3646560
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666356 transcript_id : XM_983277.1

name	Tmem30b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371461 GeneID:238257 MGI:2442082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 30B transcript_id : NM_178715.3

name	2210039B01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263304 GeneID:73644 MGI:1920894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2210039B01 gene transcript_id : XM_001476411.1

name	Prkch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130661 GeneID:18755 MGI:97600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, eta transcript_id : NM_008856.3

name	Daam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78191777 CCDS:CCDS25964.1 GeneID:208846 MGI:1914596
definition	GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0017048 - Rho GTPase binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016043 - cell organization and biogenesis [Evidence IEA] codon_start : 1 product : dishevelled associated activator of morphogenesis 1 protein_id : NP_080378.2

name	Daam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78191779 CCDS:CCDS25964.1 GeneID:208846 MGI:1914596
definition	GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0017048 - Rho GTPase binding [Evidence IEA] GO_process : GO:0030036 - actin cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016043 - cell organization and biogenesis [Evidence IEA] codon_start : 1 product : dishevelled associated activator of morphogenesis 1 protein_id : NP_766052.2

name	Gpr135 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32306524 CCDS:CCDS25965.1 GeneID:238252 MGI:2676315
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 135 protein_id : NP_861417.1

name	LOC100041239 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263301 GeneID:100041239
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476112.1

name	2810055F11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313074 CCDS:CCDS25966.1 GeneID:67217 MGI:1914467
definition	codon_start : 1 product : hypothetical protein LOC67217 protein_id : NP_080314.1

name	1200003C05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312774 CCDS:CCDS25967.1 GeneID:104771 MGI:1915057
definition	codon_start : 1 product : JNK1-associated membrane protein protein_id : NP_077167.1

name	4930403N07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263294 GeneID:73936 MGI:1921186
definition	codon_start : 1 product : hypothetical protein LOC73936 protein_id : XP_987572.2

name	Rtn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982561 CCDS:CCDS25968.1 GeneID:104001 MGI:1933947
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform RTN1-A is encoded by transcript variant 1 product : reticulon 1 isoform RTN1-A protein_id : NP_703187.2

name	Rtn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56090141 CCDS:CCDS25969.1 GeneID:104001 MGI:1933947
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform RTN1-C is encoded by transcript variant 2 product : reticulon 1 isoform RTN1-C protein_id : NP_001007597.1

name	Lrrc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313428 GeneID:78257 MGI:1925507
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : leucine rich repeat containing 9 protein_id : NP_084346.1

name	1810048J11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430539 GeneID:67708 MGI:1914958
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67708 protein_id : NP_080603.2

name	Dhrs7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313492 GeneID:66375 MGI:1913625
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : retinal short-chain dehydrogenase/reductase 4 protein_id : NP_079798.1

name	5033425G24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263296 GeneID:75998 MGI:1923248
definition	codon_start : 1 product : hypothetical protein LOC75998 protein_id : XP_001475960.1

name	Ppm1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679443 CCDS:CCDS25970.1 GeneID:19042 MGI:99878
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IDA] codon_start : 1 note : Mpp alpha product : protein phosphatase 1A, magnesium dependent, alpha isoform protein_id : NP_032936.1

name	Six6os1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313086 CCDS:CCDS25971.1 GeneID:75801 MGI:1923051
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0007275 - development [Evidence IEA]; GO:0001747 - eye development (sensu Mammalia) [Evidence NAS]; GO:0051090 - regulation of transcription factor activity [Evidence NAS] codon_start : 1 note : Six6 antisense product : Six6 opposite strand transcript 1 protein_id : NP_083720.1

name	Six6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755524 CCDS:CCDS25972.1 GeneID:20476 MGI:1341840
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : sine oculis-related homeobox 6 homolog protein_id : NP_035514.1

name	Six1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859494 CCDS:CCDS25973.1 GeneID:20471 MGI:102780
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0048704 - embryonic skeletal morphogenesis [Evidence IGI]; GO:0042472 - inner ear morphogenesis [Evidence IGI]; GO:0051451 - myoblast migration [Evidence IGI]; GO:0045664 - regulation of neuron differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0007519 - striated muscle development [Evidence IGI]; GO:0006350 - transcription [Evidence IEA]; GO:0001657 - ureteric bud development [Evidence IGI] codon_start : 1 exception : mismatches in translation product : sine oculis homeobox homolog 1 protein_id : NP_033215.1

name	Six4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859632 CCDS:CCDS25974.1 GeneID:20474 MGI:106034
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0048704 - embryonic skeletal morphogenesis [Evidence IGI]; GO:0042472 - inner ear morphogenesis [Evidence IGI]; GO:0051451 - myoblast migration [Evidence IGI]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007519 - striated muscle development [Evidence IGI] codon_start : 1 product : sine oculis-related homeobox 4 homolog protein_id : NP_035512.1

name	Mnat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89363038 GeneID:17420 MGI:106207
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : menage a trois 1 protein_id : NP_032638.2

name	Trmt5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313170 GeneID:76357 MGI:1923607
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : TRM5 tRNA methyltransferase 5 homolog protein_id : NP_083856.1

name	Slc38a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392952 GeneID:625098 MGI:3648156
definition	codon_start : 1 product : solute carrier family 38, member 6 protein_id : XP_988301.1

name	EG666356 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392954 GeneID:666356 MGI:3646560
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988371.1

name	Tmem30b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520139 CCDS:CCDS25975.1 GeneID:238257 MGI:2442082
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : transmembrane protein 30B protein_id : NP_848830.1

name	2210039B01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263305 GeneID:73644 MGI:1920894
definition	codon_start : 1 product : hypothetical protein LOC73644 protein_id : XP_001476461.1

name	Prkch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543511 CCDS:CCDS25976.1 GeneID:18755 MGI:97600
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : protein kinase C, eta protein_id : NP_032882.2

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 6 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 5 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 4 pseudo : _no_value

name	LOC100041323 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041323
definition	number : 1 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 3 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 2 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 1 pseudo : _no_value

name	LOC100041157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041157
definition	number : 2 pseudo : _no_value

name	LOC100041157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041157
definition	number : 1 pseudo : _no_value

name	LOC100041234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041234
definition	number : 3 pseudo : _no_value

name	LOC100041234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041234
definition	number : 2 pseudo : _no_value

name	LOC100041234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041234
definition	number : 1 pseudo : _no_value

name	LOC666213 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263292 GeneID:666213
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 13 ESTs, 7 Proteins product : similar to glyceraldehyde-3-phosphate dehydrogenase pseudo : _no_value transcript_id : XR_032449.1

name	LOC666220 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263299 GeneID:666220
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 ESTs, 2 Proteins product : similar to Ac2-210 pseudo : _no_value transcript_id : XR_032527.1

clone name	MSMg01-111O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-530O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447O04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236C17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293F03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-429A01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-140N20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-174F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174J04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106D19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F19
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-301N10.T7 (MSMg01no301_n10.b1)	MSMg01-301N10.TJ (MSMg01no301_n10.g1)
ACC	AG427911	AG427912
length	716	729
length of high quality (start - end)	601 (48 - 648)	288 (79 - 366)
definition	CHROMAT_FILE: MSMg01no301_n10.b1 PHD_FILE: MSMg01no301_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:20 2005	CHROMAT_FILE: MSMg01no301_n10.g1 PHD_FILE: MSMg01no301_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:39:20 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC GGAATTCAGTATGGCCGTTGTTCTTGGGCCTTTCTTTGTAAGATGTTTGT AATAAACTTGATTTAGATGTACTTCAATCTCCCATTTTCTCTTAAATCAG TACTTTTCTGCCTATTTCATTCAAATCACCTTATAATAATTTATGAATGA GCTTGATAATTTAGTTCATTGACTGTTGTTATATGCATATGTGTAAATAC AGATATATTCCTAAACATAAGCTGCTCAGTCTATAGAATGCCACTGTGTG TATGTTTTCAGGACTGACCATTGGTGTCAGATAACCTTGGCGTGCTCTTC CTTGGGAAGACTCTTTCTCCTATTCTTGGCATTCATTACCTCCCTGTGAT CACTATTCCAGGTTGTCAATTTGGCCACATCTGGAATGAACTATAATCCA GAAATGGAGGGCACACCTCTGATCCAGATCATGAGGTTGGAAACGCAGGA TTCTGACCTGGATCTTGTCAAGGAGATCTTGAGGCTTAGTGGCCAGAAGA AGCTTAGACTCAGGCAAGGTAATACAATAATCCCAAGAGACTGAGGCAAG CAGACCTCTGAGTTCAAGGCCATCCAGCAACAAAGCAAGTTCCAGATCCA GGTGTGCTGGTATACACCTTTAATCCGAGCCACACCTTCTGCTGGAAGCG GATTTAAGAACATTGG	NCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCGATTTTTACGATATGGGTT CCAGAGGGAAAAAGCAGGTCTTTACGCTTGGCTTAGGTGCCTTTACACAA TGAGGGGGAGTGGTGGGGGGCAGAGAGGGAGAGGGACAGAATAACCTTAG GGAGTTAACAGATCAGCTGGCAAAAAAAAAAAAGAAAAAAAAAAGTGTAT CTCACAAGAGCAGGCCTGCACCGGGATGCCAGCATCCACACGGTGGCCTG TGTCTGTAACTTTAGCACTAGCGTATAGGCAGAGGCCTGGGGAACCCTGG CCCTTACTGGTCAGTTATCGACTGCCCTCTGGGGTCAGCGAGAGTCCCAA TGTCAAACATAAGTATAACCCCACAGGAAAAGGATGTCTACCGCATGTAA CGTCTGGCCTCTGCATCCATGTACTCATACACATGCATGTACACATGCGC ACACACTCAAAAGTCTGTGTGTGAGTGTCCCTACTTCAATTTGAGCTATT AGTGCGCTTCACCCATTCGCCTCTTATTACATTCCTGGTTTTTGGTCCAA CTGTCCTTTCCAAATATTAACCTTCTCTATACCTGCCTACACTCTTCCAT CATTATATTCTGATTCTTGCCTTTTCTTAAACTACGTCTAACAACAATCT TCCCACCCCTTATATCCCTCTCCATTGTG
quality values	Open. Hide. 0 3 9 9 9 8 8 8 11 14 18 34 34 29 28 24 22 22 30 23 23 22 20 20 28 37 44 30 28 28 22 22 10 17 11 12 10 11 11 11 12 12 22 22 30 33 33 33 59 44 53 35 36 35 35 36 36 43 43 30 34 28 16 12 9 9 9 9 15 28 40 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 54 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 47 47 35 35 43 47 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 43 46 46 57 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 68 68 68 57 57 54 54 54 59 59 59 59 57 68 68 68 68 54 54 54 54 48 48 43 48 48 48 48 57 57 57 48 57 57 59 59 59 59 59 59 59 59 59 59 48 39 37 37 37 37 37 37 37 37 37 37 34 31 35 38 39 39 41 59 41 41 48 48 48 48 57 37 37 28 37 37 57 41 59 41 41 41 47 34 34 23 23 28 31 29 34 31 37 37 59 37 41 32 37 41 41 34 34 23 23 28 34 37 39 35 31 34 39 39 44 47 47 47 47 48 48 48 48 48 48 50 57 57 57 57 59 48 48 37 43 28 28 28 37 34 43 36 36 36 43 39 41 39 43 23 23 11 15 15 34 34 32 32 20 20 18 21 25 37 30 26 20 20 19 32 31 27 27 30 30 47 59 37 41 32 32 30 30 30 31 31 32 28 24 32 23 20 20 20 23 18 20 23 24 19 24 20 23 23 25 21 20 14 18 18 28 23 30 30 29 30 27 28 24 18 17 24 18 17 21 12 11 11 12 21 24 28 24 20 24 19 18 18 15 15 12 12 11 13 9 11 12 19 14 15 19 20 18 13 11 9 9 12 12 11 11 11 9 9	Open. Hide. 0 3 6 6 8 10 8 8 9 9 9 18 16 30 32 37 41 37 37 50 39 44 44 53 53 44 44 39 37 47 41 25 25 11 10 10 12 10 10 17 15 22 22 22 33 27 48 53 53 57 53 53 53 47 41 41 37 50 42 30 27 12 12 10 10 10 10 10 16 24 39 36 30 30 31 31 33 33 53 53 57 57 57 57 57 57 57 57 57 57 57 59 59 57 57 57 57 59 57 53 53 53 53 53 53 57 57 57 53 53 50 59 50 50 39 23 12 8 8 8 8 8 10 8 8 8 10 23 31 48 59 59 59 59 59 59 48 57 57 57 59 59 57 53 53 53 53 48 48 43 43 57 57 57 68 68 68 48 48 47 47 48 48 48 54 54 59 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 52 50 50 43 52 52 52 57 57 57 54 52 52 52 52 52 52 57 52 57 57 57 59 59 59 57 50 50 50 50 50 57 68 68 68 59 59 52 52 52 52 52 54 54 57 59 59 59 59 59 59 54 54 54 57 57 50 43 43 57 57 57 59 59 59 59 59 57 57 57 57 57 54 48 57 48 48 48 57 57 48 57 48 59 57 57 57 57 57 57 57 57 57 57 57 57 48 48 48 47 47 34 30 15 11 13 11 11 11 13 21 28 28 30 39 39 48 48 48 48 57 59 59 43 43 43 43 44 48 43 43 43 43 57 57 48 48 48 48 59 59 37 28 21 10 8 8 8 8 8 8 9 9 10 11 10 10 10 10 10 10 12 19 18 14 15 24 28 28 28 25 28 28 39 39 48 48 43 47 39 30 30 30 24 24 19 11 11 18 24 28 35 35 37 28 24 18 19 18 17 10 9 11 11 8 8 10 10 10 13 14 19 19 18 12 11 11 12 15 13 25 23 21 24 26 28 20 17 10 16 10 12 10 12 20 20 24 25 24 23 19 19 19 19 24 21 14 14 17 24 20 19 17 17 12 17 12 21 14 9 9 9 16 16 17 17 17 26 22 25 18 21 15 15 12 12 15 21 19 24 12 12 11 11 12 12 18 23 30 36 28 25 29 22 23 12 13 12 23 16 18 17 9 9 12 9 8 9 9 9 10 19 29 31 19 19 19 18 18 11 11 12 12 28 28 23 14 13 10 10 8 8 8 8 8 8 12 12 12 11 9 9 9 9 10 10 9 8 8 6 6 11 8 8 13 15 15 15 8 8 8 8 8 10 14 15 12 12 12 9 9 10 18 12 10 9 9 9 9 9 8 10 12 12 10 10 10 10 11 16 15 10 12 10 10 8 8 11 6 7 8 8 11 17 15 11 10 10 9 9 8 8 6 6 6 6 9 12 17 18 9 8 8 8 8 8 8 8 8 10 8 8 10 10 8 11 8 8 8 8 8 8 8 8 8 8 8 8 8 9 11 10 8 8 8 8 8 9 10 16 16 8 8 6 6 8 6 6 6 6 8 9 8 8 10 10 10 8 8 10 8 10 10 10 10 15 8 8 8 9 11 8 8 8 8 10 10 9 8 11 12 8 8 10 8 8 8 8 8 8 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no301_n10.g1 MSMg01no301_n10.g1 CHROMAT_FILE:
MSMg01no301_n10.g1 PHD_FILE: MSMg01no301_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:39:20 2005
         (288 letters)



>mm_chr12_73893132_73893822
          Length = 691

 Score =  437 bits (226), Expect = e-127
 Identities = 275/302 (91%), Gaps = 19/302 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgatttttacgatatgggttccagaggg---aaaaagcaggtctttacgcttggctta 57
           ||||||||||||||||||||||||||||||   |||| ||||| | ||| ||||||||||
Sbjct: 308 ctcgatttttacgatatgggttccagagggtttaaaaggcaggccattaggcttggctta 249

                                                                       
Query: 58  ggtgcctttacacaatgagggggagtggtggggggca-------------gagagggaga 104
           |||||||||||||||||||||||||||||||||||||             ||||||||||
Sbjct: 248 ggtgcctttacacaatgagggggagtggtggggggcagagagggagagaggagagggaga 189

                                                                       
Query: 105 gggacagaataaccttagggagttaacagatcagctggcaaaaaaaaaaaagaaaaaaaa 164
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 188 gggacagaataaccttagggagttaacagatcagctggcaaaaaaaaaa---aaaaaaaa 132

                                                                       
Query: 165 aagtgtatctcacaagagcaggcctgcaccgggatgccagcatccacacggtggcctgtg 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 aagtgtatctcacaagagcaggcctgcaccgggatgccagcatccacacggtggcctgtg 72

                                                                       
Query: 225 tctgtaactttagcactagcgtataggcagaggcctggggaaccctggcccttactggtc 284
           ||||||||||| ||||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct: 71  tctgtaactttggcactagcggagaggcagaggcctggagaaccctggcccttactggtc 12

             
Query: 285 ag 286
           ||
Sbjct: 11  ag 10


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 691
Length adjustment: 9
Effective length of query: 279
Effective length of database: 682
Effective search space:   190278
Effective search space used:   190278
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information