BAC Information

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BAC

Clone NameMSMg01-302I07
Chromosome12 (Build37)
Map Location 114,968,918 - 114,969,206
singlet/doubletsinglet
Overlap geneIgh
Upstream geneAW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6
Downstream geneIghv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302I07.T7 (MSMg01no302_i07.b1)MSMg01-302I07.TJ (MSMg01no302_i07.g1)
ACCAG428385AG428386
length729731
length of high quality
(start - end)
319 (43 - 361)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no302_i07.b1 PHD_FILE: MSMg01no302_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:10 2005CHROMAT_FILE: MSMg01no302_i07.g1 PHD_FILE: MSMg01no302_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:10 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCATGTCATTTGGATATTGGCCTTCCATGGGACTTAGGGATAGTGAA
GAACTTTTTCTAATCTGTAGGCTGCCATTTTGTCTTATTGACTATGTCCT
TTGCCTTACAGATTTTTTTCAGTTTCATGAGATCCTGTCTACCAATTTAT
GATCCTAGAGCCTGAACCATTGTGGTTCTCTTCAGGGAATTGTCTCCTGT
ATCAATGAGTTCAAAACTATTCTCCACTTTTTGTTCATTTAGATTTAGTT
AATCCAGTATAGGTTGAAGTCTGCCATTCACTTTGATTTGAAGTTCGTGC
AGGATGATATATATGAATCTACTCCGCCTCTAGATCAGCACCATTTGTTG
GGGGATGCATTCTTTTTATTATGAGTTTTATTATGATTATTGGGTTCTTT
ATCAAAAATCAAATGTCCATAAATGTGTGGTATTTTTTCAGAGCATTCGA
TTCAATTCCATTGATCATTGTATGTGTTTCTATACAAATACCATGCAGTT
TTTATTACTATTACTGTACAGTACAGCTTGAGGTCAGGGATGGTGATTTC
TCCTGAAGTTGTTTCATTATTCAGGATTGTTTTAGCTTTATGAATTTGAG
ATTTGCTTTTTCAAGGTACGTAATAAATTGGGTTGGAAATTTAATGGGAA
TTGCACTGAATGTGTAGATTGATTTATTA
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGGAGATTCATGCCTTGTGAATCCAT
CCCAATCTGATCTCAATCTTCAAACATGTTTGTGCATAATTTACATCTTA
ATCAGTTGCTGGAAATTAAAAGGACATAAGCTAAACTTTAAAACTCTTTC
TATTTAATGTGTCAGAATAGAATATGTGGACTGAAGTTTACATGTGCATA
GGATATCATTGTTACAATGATGGTTCAGATATGCACCAGTAGCACAGGTG
ATGCTTAACTGGAAAAAACTGTGACCAGAGCCCAGATGTTGATGTTGGCT
GAAAGAACCTATTGTTCCATACTCCCACCCACCAGAAGTGTTATTCAGAG
AAGCAGTGCTGGATTTGGGATCCATCTTAATGAATCAGCAACATGAGGAA
GATTTGGAAGCCAGATTGATGAGATTACTATAATCCTGGTTCTGAACACA
CAACACACAATAGTAAGTTGAACTTCTCCATGCAATGCTAAAGATAAAGC
ATCCAGTATCATGTTACACAGGACCAAGCTGAGGATCAGTCTGTGGGTGA
AATACAATGAACAGAAAGTCGGTTGGAATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATCNAAA
CCNATATTTATATTTCTAATTCTTAAGGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_i07.g1 MSMg01no302_i07.g1 CHROMAT_FILE:
MSMg01no302_i07.g1 PHD_FILE: MSMg01no302_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:10 2005
         (292 letters)



>mm_chr12_114968654_114969345
          Length = 692

 Score =  366 bits (189), Expect = e-105
 Identities = 264/291 (90%), Gaps = 10/291 (3%)
 Strand = Plus / Minus

                                                                       
Query: 7   gattcatgccttgtgaatccatcccaatctgatctcaatcttcaaacatgtt--tg--tg 62
           |||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||  | 
Sbjct: 553 gattcatggcttgtgaatccatcccaatctgatctcaatcttcaaacatgatcatgatta 494

                                                                       
Query: 63  ca--taatttacatcttaatcagttgctggaaattaaaaggacataagctaaactttaaa 120
           ||  |||||||||||| || || ||||||| |||||||| ||||||||||||||||||||
Sbjct: 493 caagtaatttacatctaaagcatttgctgggaattaaaaagacataagctaaactttaaa 434

                                                                       
Query: 121 actctttctatttaatgtgtcagaatagaatatgtggactgaagtttacatgtgcatagg 180
           ||||||||||||||||| ||||||||||||||||||||| ||||| || |||||||||| 
Sbjct: 433 actctttctatttaatgggtcagaatagaatatgtggacggaagtctaaatgtgcataga 374

                                                                       
Query: 181 atatcattgttacaatgatggttcagatatgcaccagtagcacaggtgatgcttaac-tg 239
           ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||
Sbjct: 373 atatcattgttacaatgatggttcaaatacgcaccagtagcacaggtgatgcttaacatg 314

                                                              
Query: 240 gaaaaaac-tgtgaccagagcccagatgttgatgttggctgaaagaaccta 289
            ||||||| | ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 313 -aaaaaacctatgaccagagcccagatgttgatgttggct-aaagagccta 265


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)