Query= MSMg01no307_h06.b1 MSMg01no307_h06.b1 CHROMAT_FILE:
MSMg01no307_h06.b1 PHD_FILE: MSMg01no307_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:31 2005
(636 letters)
>mm_chr12_82537062_82538097
Length = 1036
Score = 435 bits (225), Expect = e-126
Identities = 237/241 (98%)
Strand = Plus / Plus
Query: 7 gaattctctgattaccctgcatctcagaacatacccatcacagccatgcaaaatagtgaa 66
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctctgaagaccctgcatctcagaacatacccatcacagccatgcaaaatagtgaa 266
Query: 67 ccatctctagaaaacgtacttgctgtcatagccttttctagaaggcttctgaaagacctg 126
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 267 ccatctctagaaaacgtacttgctgtcacagccttttctagaaggcttctgaaagacctg 326
Query: 127 aaaggaattggacaatgggaaatcatgatagggatatgtcatatggatgttgttcaataa 186
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 327 aaaggaattggacaatgggaaatcatgatagggatatgtcatatggattttgttcaataa 386
Query: 187 aaatccaaaagaagtaaaccaactggacgtgattgatggaatgttaagactacagagatg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aaatccaaaagaagtaaaccaactggacgtgattgatggaatgttaagactacagagatg 446
Query: 247 t 247
|
Sbjct: 447 t 447
Score = 296 bits (153), Expect = 4e-84
Identities = 177/191 (92%), Gaps = 11/191 (5%)
Strand = Plus / Plus
Query: 232 aagactacagagatgtcacgaaaag--aaaaaaaaatcaaggtgtaaaacagttgttttt 289
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 855 aagactacagagatgtcacaaaaagaaaaaaaaaaatcaaggtgtaaaacagttg----- 909
Query: 290 ttttttttttttttttttttatcaaatttaagcaagtgataaccagtcctcaaaacacta 349
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 910 ----ttttttttttttttttatcaaattcaagcaagtgataaccagtcctcaaaacacta 965
Query: 350 tatactgcttcctgttcccatttgcacctgagcgttgaccctgggccacaagccccaaca 409
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 966 tatactgcttcctgttcccatttgcacctgagagttgaccctgggccacaagccccaaca 1025
Query: 410 ccccaatccca 420
|||||||||||
Sbjct: 1026 ccccaatccca 1036
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no307_h06.g1 MSMg01no307_h06.g1 CHROMAT_FILE:
MSMg01no307_h06.g1 PHD_FILE: MSMg01no307_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:31 2005
(636 letters)
>mm_chr12_82696813_82697848
Length = 1036
Score = 586 bits (303), Expect = e-171
Identities = 439/523 (83%), Gaps = 65/523 (12%)
Strand = Plus / Minus
Query: 1 tttgatctgtgagccgaaaagtcccagttaaattaacggttctcctgccttgttcgtgga 60
||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 505 tttgatctgtgagtcgaaaagtcccagttaaattaatggttctcctgccttgtttgtgga 446
Query: 61 ttctggttacatgctgggggagcctaggtagtccttagttttgtgaatttaggttccttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctggttacatgctgggggagcctaggtagtccttagttttgtgaatttaggttccttc 386
Query: 121 cttcaggttttggggttctcctctcagtttctgtatcttgtttgtaaccatctccatcat 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 385 cttcaggttttggggttctcctctcagtttctgtatcttgtttgtaagcatctccatcat 326
Query: 181 tttgcttttagaaagccacattagagacagaacgttctgttgtggctttctatggcttcc 240
|||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |
Sbjct: 325 tttgcttttagaaaaccacactagagacagaacgttctgttgtgggtttctatggctt-c 267
Query: 241 ct-acatcacagaattgttccctgccttcaagtgtttagacactactcaaggaatttctc 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 266 ctcacatcacagaattgttccctgccttcaagtgtttagacactactcaaggaattcctc 207
Query: 300 ttctctttgtgtgtgtgtgtgtgtttgtttttgtttgttgttgccgctgttttttcgttc 359
|||||| | | | | | | | |||||||| |||||| |||||||||
Sbjct: 206 ttctctctctctctctctct-------tttttgtt-gttgtt---------ttttcgttc 164
Query: 360 cttttctctc--ttaaaaa----------------------------------------- 376
|||||||||| |||||||
Sbjct: 163 cttttctctcatttaaaaattttatttattgatttatttatttattgatttatttattta 104
Query: 377 ---atctatttatttatttatctatctatttatttatttgttttgagacagggtttctct 433
|| ||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||
Sbjct: 103 tttatttatttatttatttatttatttatttatttatttattttgagacagggtttctct 44
Query: 434 gtatagccctggctgtcctggaactcactttgtagaccaggct 476
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43 gtatagccctggctgtcctggaactcactttgtagaccaggct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
