BAC Information

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BAC

Clone NameMSMg01-308J16
Chromosome12 (Build37)
Map Location 93,946,689 - 93,946,923
singlet/doubletsinglet
Overlap genenone
Upstream geneSton2, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308J16.T7 (MSMg01no308_j16.b1)MSMg01-308J16.TJ (MSMg01no308_j16.g1)
ACCAG432637AG432638
length736739
length of high quality
(start - end)
615 (45 - 659)235 (128 - 362)
definitionCHROMAT_FILE: MSMg01no308_j16.b1 PHD_FILE: MSMg01no308_j16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:58 2005CHROMAT_FILE: MSMg01no308_j16.g1 PHD_FILE: MSMg01no308_j16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:49:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTACATCATCTGCCACTGACAACTGCTTTGTTTCCTTTTTCCTAATAAA
TACATCTTTCATTTTATTTGTTGTTTTATTCCCTAACTAATACTGTCATG
TGATGTGGAAAATCAGAGAAGAGAGGAGTGTTTTTGCCTTGTTCCTTACT
TAAATGAAGAAGGCTTAAGGGATGTTCTGGAGAGAAGTGTCTGCATAGCA
TTGTACTTACTTTGTCAAGTTGATGGGTTTCCAATCTGTTTCTAGTTTCA
GACTGTCTTATTATGAATGAATGTTAGAAGGTTTTCATGTATTTGTATCC
GTTGATATGGCCACAGGATTATTTCTCTAAATTTTCCCTTATCTTCATGT
ATCTTTGGAGATGGGCCAACGTCTGACGTTAATAATGTGTGTCCTTTTTC
ATTTGTCTTACTAACCCTAGTCAGTAATTTATTTTCTTTTGCTTTCATTT
ATTGATTTCTGTATATTTTCTACTTTCAATTTTATTACTTGCTCTAAATT
TGTCTCCTTTTATTAAAGTTTACTATTATTATTATTTTTAGTTTTACTTA
CCCATTTTACATCTGTCTTCCCATAATCCCTCCCCCTTCATCCTCCCCTT
CTCCTCTAAGTAGGAGCAGACACACTGGGTATCCCCCTACCCTGGAATTT
CAAGTCTCTGCCAGGCTAGGCACATTCTCTTCCACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCACAAAAATTCTAATTAAACATTTCAGCATCAGC
CCTTTTCAGCCACCCTACACCTGTACTCCTGACTTCCACAAATGAAATTC
AAACCACCATTTGAAAACAGCTTCACGCTGTTCTCCCCTCTGATCCACAC
ACTCCCCTCCCGCTTTCTTTCTGATTCTCAGCCAATGTCCCTCCCAATGG
CTTAACTGAAGTTTCTAAAAAGAAAACATCAGGGGTAACCATGATTCTAG
GCTCTCCCTTCTGTCAACACTATTCCAGCACAGGCAGTCATCAAATAGGC
TCCACCTTGTCACATAATCCTCTACAACGCCCCCTAATTAGAAACTGTGA
CTGAATGTTAATTTCTTTCACCGACCTATCACACTGATTCTTGGGCCTGA
TCAGTCTGTCCCTAACCTCTCTAACCTTACCCATATACTTGTGTTTCGGA
TAGCCCTGGGGCTATTTGTAATTTGATCCTAATTCAGTTCTCCCAGAAGG
GGTTGACAACAAGGAATAAGTCAGCACTCAGGTGATTTCCTGTAAACCTT
ATTCCCACCTTAATTGATAAAATAAAGGCTAGTACAGGTGATTGGGCAGA
GAAAGCAAAGGTGGCACTGAAAGTTGGGAGAGAGAAGAAGAAGGTCTGGG
AGAGAGAGGAAGGAGGAGCAGAAACATCTGGCCTGTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_j16.g1 MSMg01no308_j16.g1 CHROMAT_FILE:
MSMg01no308_j16.g1 PHD_FILE: MSMg01no308_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:49:58 2005
         (235 letters)



>mm_chr12_93946489_93947123
          Length = 635

 Score =  431 bits (223), Expect = e-125
 Identities = 232/235 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgacttccacaaatgaaattcaaaccaccatttgaaaacagcttcacgctgttctccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 435 cctgacttccacaaatgaaattcaaaccaccatttgaaaacagcttcatgctgttctccc 376

                                                                       
Query: 61  ctctgatccacacactcccctcccgctttctttctgattctcagccaatgtccctcccaa 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 ctctgatccacacactcccctcccactttctttctgattctcagccaatgtccctcccaa 316

                                                                       
Query: 121 tggcttaactgaagtttctaaaaagaaaacatcaggggtaaccatgattctaggctctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tggcttaactgaagtttctaaaaagaaaacatcaggggtaaccatgattctaggctctcc 256

                                                                  
Query: 181 cttctgtcaacactattccagcacaggcagtcatcaaataggctccaccttgtca 235
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 255 cttctgtcaacactattccagcacaggcagtcatcaaatcggctccaccttgtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)