BAC Information

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BAC

Clone NameMSMg01-309M20
Chromosome12 (Build37)
Map Location 26,015,935 - 26,016,227
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
Downstream geneLOC100042973, LOC100042974, LOC668726, Rnf144
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309M20.T7 (MSMg01no309_m20.b1)MSMg01-309M20.TJ (MSMg01no309_m20.g1)
ACCAG433485AG433486
length760743
length of high quality
(start - end)
324 (45 - 368)293 (77 - 369)
definitionCHROMAT_FILE: MSMg01no309_m20.b1 PHD_FILE: MSMg01no309_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:28 2005CHROMAT_FILE: MSMg01no309_m20.g1 PHD_FILE: MSMg01no309_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGAGATGTAGCCATTCAGATCTCTTGAGTTCAAGGTCAGTATACA
GAGCAAGTTCTAGGACAGCCAAGCTTAGGCAGTAAATGAGTTGGAAAATA
GAAAGCTGGTGATAATATAATAGAAGAAGAGGGCCATGTTTGAATCTCCA
GCAAGCAGCAGAACTCAGCAGCTTTGGCCATGTATCTCTGGCTTTATAGT
CAAAAATAGAAAAAAATACTGGGACAATTGATGCTGGTTAGCTAGAGCTA
AGGAATTAGCAGTGATTAAGAAGAGACTAGAATCACTGAGGTAAAATCTG
GGAAGTTTTTCTGATATTTCTTAGATACCCCACCCCGCACCTCATGCTGC
AGCTGGTCTTGGCAACATGCCCCAATCTCCCAAAATATACTGGTTTTGAA
GGTATGAATGAGTCATGGAGAGCAGTTGAGGCTTGGCACCATGAAGGAAG
CATAATGGGAGACTATTGGCAAAGCCTAGTTGCAATGAGAAACCCCAGTG
TGTTAGAGATGCCAGTATTATGGTATGACCACCATAAACAGCAGCAACAG
TGGAGTGTAGTCTGCCAGAGCCCATAGTGCTATCTAGAGCCGAGCTGGAG
AAGTGACCCTATCTCTTTTGAGAAGCCCACAAGACCATGTGTAGACTTTA
TACTTTGTATTTTGACACTTAAAAGTTACCTTGGAGAGCTTATGATATTC
ACCGACGCCG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTCTATGATGGGGATTTGTTTT
TGATATCAGAATTTCTCAAAGTTAAGGCCAGATCTCTGGGGTGCTTTGGG
GGTTTAAAGATTGTATAATTTTCTTTAAAAGTATAAAATTAATAATATGT
AGTTAAATATGGAAGTTGAAATCTGTTGAGAATAGGAAAATCTCAATAAA
TTATACATTTTAAGAGTTAGTGTGCTGGTTCTGCCTTTATCACTGTGAAA
AAGATTCTTGTGTTAAGTTATCAGAAGGAAGGTCTGTTTTGGTGTGGAGG
ACTGTACATAACTGTGCTGTTTTTTGGGCCCCCGCCGCAATATGCTGGCT
ATTTCATGGTGGACAGGAACCCCACCACAGACTCAATATCATCATCCAGG
ACACACCTATGATGACCTAATTTCTTCGTAGAGGAAAACTTCTGAAGGTT
TTAAACTTCCCTCAGAGTGTCATCCACTGAAAATAAAGATGTTAAAACAT
GGCCTCTGGTGAAAGAGTCCAGATTCAATTATAGCTGCCTGAGAAATGGT
ATGATCGTGATGTAAACTGCCTCTCTTGCTAGCTAGCTACATTGGAAATG
CTCTTTCTCCCCTAAATTTTTGCCAAAAGTGTTTGTTTTTGTCTCCCCGC
TTTTTTATTATCTCTCCTTCCCCTATTTTCGTCTACCACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_m20.g1 MSMg01no309_m20.g1 CHROMAT_FILE:
MSMg01no309_m20.g1 PHD_FILE: MSMg01no309_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:29 2005
         (293 letters)



>mm_chr12_26015735_26016427
          Length = 693

 Score =  551 bits (285), Expect = e-161
 Identities = 291/293 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctatgatggggatttgtttttgatatcagaatttctcaaagttaaggccagatctc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 tcttctatgatggggatttgtttttgatatcagaatttctcaaagttaagggtagatctc 260

                                                                       
Query: 61  tggggtgctttgggggtttaaagattgtataattttctttaaaagtataaaattaataat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggggtgctttgggggtttaaagattgtataattttctttaaaagtataaaattaataat 320

                                                                       
Query: 121 atgtagttaaatatggaagttgaaatctgttgagaataggaaaatctcaataaattatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtagttaaatatggaagttgaaatctgttgagaataggaaaatctcaataaattatac 380

                                                                       
Query: 181 attttaagagttagtgtgctggttctgcctttatcactgtgaaaaagattcttgtgttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attttaagagttagtgtgctggttctgcctttatcactgtgaaaaagattcttgtgttaa 440

                                                                
Query: 241 gttatcagaaggaaggtctgttttggtgtggaggactgtacataactgtgctg 293
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttatcagaaggaaggtctgttttggtgtggaggactgtacataactgtgctg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)