BAC Information

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BAC

Clone NameMSMg01-309N10
Chromosome12 (Build37)
Map Location 109,487,332 - 109,487,636
singlet/doubletsinglet
Overlap geneEG668158
Upstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk
Downstream gene1600002O04Rik, Cyp46a1, Eml1, Evl, Degs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-309N10.T7 (MSMg01no309_n10.b1)MSMg01-309N10.TJ (MSMg01no309_n10.g1)
ACCAG433512AG433513
length666740
length of high quality
(start - end)
316 (4 - 319)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no309_n10.b1 PHD_FILE: MSMg01no309_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:31 2005CHROMAT_FILE: MSMg01no309_n10.g1 PHD_FILE: MSMg01no309_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:51:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGGATCCGCGGAATTCTACGAAGGAGAGCTGGGTCTGGTTCCCAGTACT
GCCCCTTGTCTGAAGCTGGGCTCTTGGGCTTGGAGAGACCAAGGTCGCAG
CGGGCATTCACATTTCTAGAACTCTAAGCTTGGCGGGGGCCACCCAGTGG
TTCAGTGGCTCTCACCACTCTCTAAAGGTTCCCTGCAGATGAAGGCTGTG
CTCAGGGTTAGCTGCACTGCAGCGGGGCTGGCTGGAGACTCCATGGCTGC
GGGAGAAATGAGTGGGGTGTGAGTGATGGCCTCTTTCTGGGTCCCTGATA
TCTCCAGATATTCTGGTTGTTTTCCTTGTCACCCCCCCCCCTGGNATCAA
GTTCTGTCCTAGGCCTTGACTTGTGCCGCCCACAAAAAAAAACAAGAAGT
CCCTGGGGGGGCATCACTGTCATCCCATCTCACGTGCTGCAGAGGTGAGG
CCGTATGTTCAGGTGGTCCGTGCACGGTCATCTCCTAATCAAGGAGAAGG
AATTATAATCTCATACTCAGGCCCTTCCTTTAGCTATAGATGTTATTATA
TCTTGAGTGCCTGCTCGATAACCATTTAGGACTTTGTTGATGCCGTCGTG
CCCGATATAACATCACCCGATCCCGCCCAATATTTTATTATAATACCCCA
TTTGCCCCCCCCACAC
NCAATGCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCGAGAAAATACCTGTCCTGACTTCCCTCGGTGATG
GAGCATGGTCGAGATGTGTATGCACAAACAAATTTTTTCCTCCTCAAGTG
GCTTTTGCTCAGAGTGTTTGTCACAGCAACAGAAGGCAAACTGATACAGA
CAGTCCCACTCCTACACACACACACACACACACACACACACACACACAAT
CTCTGTGATACTGGACTCTCCTGCAGTGGAGAGAGAAAGGCAGGGTTCGA
CTCAGGGAAGCCCAGGTCCCATCTCNATCNTCACAGCTTGCTAGCTGTGA
CCCCACATGGGCTGTTTGATCCCAAGCTCCCATATCTGTAAACTGAAGTT
ACTGTCTGGCGGTATTGTCAGAGGCTGAGCTGGGAGCAGAGTGCCCAGAC
TACAGGTGTCAGCATGCACCGAACCCCCACCTACCCCGCCATCTTCTTCA
TCTTCCTCTATCACCCCCACATCCTTCACCCCCGATTTCACTGAACTGAT
GTCACAAAACCTTCAGTCCTGGCTTTGTTTTCTGTGTGATTCTCCTCACT
GATTGCTTATCCCCACCATGAGGGACCATTTTGTCCAATGCCGATGGGAA
TTTGCTCGAAAAATATTATTTGATGAGAGGATGAGGACGGAGGAGGATGT
ATTCTTCTTTCCTTTTTTATACCCTTCATTCTCTTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no309_n10.b1 MSMg01no309_n10.b1 CHROMAT_FILE:
MSMg01no309_n10.b1 PHD_FILE: MSMg01no309_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:51:31 2005
         (316 letters)



>mm_chr12_109487124_109487839
          Length = 716

 Score =  582 bits (301), Expect = e-171
 Identities = 304/305 (99%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctacgaaggagagctgggtctggttcccagtactgccccttgtctgaagctgggc 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattctacgaaggagagctgggtctggttcccagtactgccccttgtctgaagctgggc 454

                                                                       
Query: 69  tcttgggcttggagagaccaaggtcgcagcgggcattcacatttctagaactctaagctt 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcttgggcttggagagaccaaggtcgcagcgggcattcacatttctagaactctaagctt 394

                                                                       
Query: 129 ggcgggggccacccagtggttcagtggctctcaccactctctaaaggttccctgcagatg 188
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 393 ggcgggggccacccagtggttcagtggctctcatcactctctaaaggttccctgcagatg 334

                                                                       
Query: 189 aaggctgtgctcagggttagctgcactgcagcggggctggctggagactccatggctgcg 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaggctgtgctcagggttagctgcactgcagcggggctggctggagactccatggctgcg 274

                                                                       
Query: 249 ggagaaatgagtggggtgtgagtgatggcctctttctgggtccctgatatctccagatat 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ggagaaatgagtggggtgtgagtgatggcctctttctgggtccctgatatctccagatat 214

                
Query: 309 tctgg 313
           |||||
Sbjct: 213 tctgg 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)