BAC Information

Click to search

BAC

Clone NameMSMg01-311G04
Chromosome12 (Build37)
Map Location 35,382,872 - 35,477,370
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668806, Ferd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575, LOC629758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311G04.T7 (MSMg01no311_g04.b1)MSMg01-311G04.TJ (MSMg01no311_g04.g1)
ACCAG433902AG433903
length738737
length of high quality
(start - end)		613 (45 - 657)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no311_g04.b1 PHD_FILE: MSMg01no311_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:13 2005CHROMAT_FILE: MSMg01no311_g04.g1 PHD_FILE: MSMg01no311_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,382,872 - 35,383,478)(35,477,083 - 35,477,370)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAAGCAGCCAGTCCAGGCTAATTCATAATTTATCTCCCACTCTTT
CCATTCTCCTGGATTTCTCCAGCCTGAAAGAAATAACTGCTTCATTGTAG
TTCTGGGTTAGAAGCAGTCACAAAGAAATCTGCAGTGTCCCCAGCTGGGC
TCCGATATGGAGATACAGCTGTGCTCTCCCATCTCCAGAACACAATAGAC
TGACTCCATCCCTCCATTGCCCTCCCCTCTCCCAATCTCACTTGCTAACC
TGAGTTTCTATAGAGCCTGTCACCATAGAATTGTCCAACATCACTTGGCA
AAGGGAAAGTTTTACCTTGTAAGGAAGAAGGATGGGAGGGCAGTTTTAAA
AGAATAAAGATGGTTTTGAAAGGCAAACACCCTCTGGCTTGTGTTCTCAC
CATTCTGACTAAATTTGGGGAAGTATTGACTCTTTCCACTTAAATCAACT
TTAATTTTATATATAATCAAATTACAGGTTCAAAGTCGACATCGCACATA
TCTGAAATTCATCCCAAAAGTATATTAAATAGTTCTTAGTAAAATTTTCC
AAGTGAAGATGATTGTCATTTAACTTCATTTGTTTATTTTCTATGTTAGC
ACAAAACTCCCTAACAGAGCGAGAGAAATCAAGTCCATGTAGTAAGTAAA
ATGCTGGCCACATGGCTGAGCACACAAAGCAAGCACAN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGAAAACAGCAAGGGAGACACATG
GTTTAAAAACTAGGTTTTCAGAATGCTGTGTTCAATTGGAATCCTTTCTG
TGCTGATGTAGAGCAGAGCAAAGTGTCATATGAACGGCTTCCTAACCGAA
GGTGGTTTTCATTTATTAATGTAAATGCCCCATGCCTTGGATGTGTGAGT
CCTAAAAATATGCTTCTGTGGCTAAAAATAGAGCCCCAGAGTTCTGCGAT
GTGGCTTAATCAGAAGCAGCTGCAGGCTGTCTAGAAAATGCAAGTTATAG
GAGGCAGATGGCTTTTGTTCTTTTTGCTCCAGACAGCATGTAATTTGGAT
AACTACAGCTACAGTAACACCCCCCGCCAGACACAATGTTTGATAGGCGT
GTTGTTGAGAACAGCCACTTCCAATTAAAACCCCAGTAAAATGTTAATTT
ATTTTGCTATTATTTCCCTGCAGAGTAATAAAAAATGCTTTTCCAGGTTC
AGAGGTATCTGTGCACAGGCTGGAGCACTATTCAAAAGTCACTGTGTACT
GGTGGCTGGGTTTTAAAGCTGGCACTGAACGGAGGCAGGAGCATATTCCT
GCCCAGCGCCTGCCGTTTGCTCCCGAAAACCTAGTTTACCCAGGATGCTC
TAGGATCTTCATGTTTGGGATGATATTTGCTTTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_g04.b1 MSMg01no311_g04.b1 CHROMAT_FILE:
MSMg01no311_g04.b1 PHD_FILE: MSMg01no311_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:13 2005
         (613 letters)



>mm_chr12_35382668_35383680
          Length = 1013

 Score = 1151 bits (595), Expect = 0.0
 Identities = 604/607 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcaagcagccagtccaggctaattcataatttatctcccactctttccattctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaagcagccagtccaggctaattcataatttatctcccactctttccattctc 264

                                                                       
Query: 65  ctggatttctccagcctgaaagaaataactgcttcattgtagttctgggttagaagcagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggatttctccagcctgaaagaaataactgcttcattgtagttctgggttagaagcagt 324

                                                                       
Query: 125 cacaaagaaatctgcagtgtccccagctgggctccgatatggagatacagctgtgctctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacaaagaaatctgcagtgtccccagctgggctccgatatggagatacagctgtgctctc 384

                                                                       
Query: 185 ccatctccagaacacaatagactgactccatccctccattgccctcccctctcccaatct 244
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 385 ccatctccagaacacaatagactgactccattcctccattgccctcccctctcccaatct 444

                                                                       
Query: 245 cacttgctaacctgagtttctatagagcctgtcaccatagaattgtccaacatcacttgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacttgctaacctgagtttctatagagcctgtcaccatagaattgtccaacatcacttgg 504

                                                                       
Query: 305 caaagggaaagttttaccttgtaaggaagaaggatgggagggcagttttaaaagaataaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caaagggaaagttttaccttgtaaggaagaaggatgggagggcagttttaaaagaataaa 564

                                                                       
Query: 365 gatggttttgaaaggcaaacaccctctggcttgtgttctcaccattctgactaaatttgg 424
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatggtttagaaaggcaaacaccctctggcttgtgttctcaccattctgactaaatttgg 624

                                                                       
Query: 425 ggaagtattgactctttccacttaaatcaactttaattttatatataatcaaattacagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggaagtattgactctttccacttaaatcaactttaattttatatataatcaaattacagg 684

                                                                       
Query: 485 ttcaaagtcgacatcgcacatatctgaaattcatcccaaaagtatattaaatagttctta 544
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcaaagtcgacatcgcacatctctgaaattcatcccaaaagtatattaaatagttctta 744

                                                                       
Query: 545 gtaaaattttccaagtgaagatgattgtcatttaacttcatttgtttattttctatgtta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtaaaattttccaagtgaagatgattgtcatttaacttcatttgtttattttctatgtta 804

                  
Query: 605 gcacaaa 611
           |||||||
Sbjct: 805 gcacaaa 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_g04.g1 MSMg01no311_g04.g1 CHROMAT_FILE:
MSMg01no311_g04.g1 PHD_FILE: MSMg01no311_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:13 2005
         (288 letters)



>mm_chr12_35476883_35477570
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaaacagcaagggagacacatggtttaaaaactaggttttcagaatgctgtgttcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tgaaaacagcaagggagacacatggtttaaaaactaggttttcagaatgctgtgttcaat 429

                                                                       
Query: 61  tggaatcctttctgtgctgatgtagagcagagcaaagtgtcatatgaacggcttcctaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggaatcctttctgtgctgatgtagagcagagcaaagtgtcatatgaacggcttcctaac 369

                                                                       
Query: 121 cgaaggtggttttcatttattaatgtaaatgccccatgccttggatgtgtgagtcctaaa 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 368 cgaaggtggttttcatttattaatataaatgccccatgccttggatgtgtgagtcctaaa 309

                                                                       
Query: 181 aatatgcttctgtggctaaaaatagagccccagagttctgcgatgtggcttaatcagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 aatatgcttctgtggctaaaaatagagccccagagttctgcgatgtggcttaatcagaag 249

                                                           
Query: 241 cagctgcaggctgtctagaaaatgcaagttataggaggcagatggctt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cagctgcaggctgtctagaaaatgcaagttataggaggcagatggctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |