BAC Information

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BAC

Clone NameMSMg01-311I19
Chromosome12 (Build37)
Map Location 30,270,241 - 30,408,053
singlet/doubletdoublet
Overlap geneMyt1l
Upstream geneColec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311I19.T7 (MSMg01no311_i19.b1)MSMg01-311I19.TJ (MSMg01no311_i19.g1)
ACCAG434019AG434020
length739742
length of high quality
(start - end)		321 (45 - 365)290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no311_i19.b1 PHD_FILE: MSMg01no311_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:26 2005CHROMAT_FILE: MSMg01no311_i19.g1 PHD_FILE: MSMg01no311_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,270,241 - 30,270,556)(30,407,764 - 30,408,053)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGCAATGGGAT
CAGATGCCCTCCTCTGGTGTGGCTGAAGACAGCTACAGTATACGCATATA
AAATAAACAAATAATTCTTTAAAAAAAACTACAAGGTGGAAGAAAACCTT
TGCTAATTATATATTATACAGGGAAACATATCAAGAACCTTAAAAATTAA
ACAACACAGAACCCCTCCCCCAAATTTTCTAATCAATAAGTAGATTAATG
AACAAAATAGTTTTCAAAATAAGAAGCAATAATGGCCAAAAAGTCTTTGG
AAATTGTTCAACATTTTTATCCATCGCCCCACCCCAATAAAAATACTTTG
AGATTCCATCTCACCCTACCCCACATATCAAGAAGAAAATAAAGACNAGG
AATGCATCTAAGGATTATAAGAAAGGGTACCTCTCATTAATTGCTGGTGG
GAATGTGAACAAGTCCATGGCAATCAGAAAAGAGATTCCTCAGAACACTG
ANAGCAGGACTATCATACAACCCAGCTATAGATAGATGCCCCAAAGCAGC
TTTGCCACAGAAGTACTGGAACACCCAAGTTTTTGTAGTACTATTCACAA
TAAGCAGGAAATGTACCATTGTAGATATTCATCANCCAACCAACCAATTA
ATCAATAATGCAATGCATATATGCAATGGTATTTAATAT

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCATGAACTTTCAGAATTAATC
TACCACCTTGTATAACAAGCAGAGACTGTATACATCCATCTGGAAGCTAC
CACAAGAGTCCTTTCTGCTCCTTGATCCTTGGCCAGTGCTATACTGGGTA
CATGTCTAGACAATACCAGGATCCATGCTCTGGGTAGTATAGTCTGTGAT
TGCTACCTCCCAGCTTGCCTCTGTCTGTTTTGTTTCCTTTTTGTGGGAAA
TAACTCCATAGCTTCCTAAGGAAAGGATCTTGGAGGATAATGTTTTCAAA
ATATTTTTAAATATTATTTTATCTCTCGCCCCCCACCTAAATACATTAGG
AATGTAAGTCACAAAGTCACCCCCCGCCAAAAAGAAAAAAGAAAAACAAC
GGCAGCAACAGCAACAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAG
CAGCAACAACAACAACAACAACAACATCCCAGACATCCGAAGCTCAATTC
GAAGCTTTCCTTACACTCCATGTCCAGGACTATTAGAATCTTCTTGCTTC
TAATATTTTTGGATTCTTCCTCAAACAGGAAGGGGAGCTACTCAGTGGTC
ACTAGGAGCAGTCTGTGATTGCGCAAGAGCAAGTGCTCTTTAACTCTGAG
CCCAGATACTTGAGCTTTCTACTGAAGACAGAGATATTTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_i19.b1 MSMg01no311_i19.b1 CHROMAT_FILE:
MSMg01no311_i19.b1 PHD_FILE: MSMg01no311_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:26 2005
         (321 letters)



>mm_chr12_30270037_30270757
          Length = 721

 Score =  611 bits (316), Expect = e-179
 Identities = 316/316 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattcccagcaaccacatggtggctcacaaccatctgcaatgggatcagatgcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattcccagcaaccacatggtggctcacaaccatctgcaatgggatcagatgcc 264

                                                                       
Query: 65  ctcctctggtgtggctgaagacagctacagtatacgcatataaaataaacaaataattct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcctctggtgtggctgaagacagctacagtatacgcatataaaataaacaaataattct 324

                                                                       
Query: 125 ttaaaaaaaactacaaggtggaagaaaacctttgctaattatatattatacagggaaaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaaaaaaactacaaggtggaagaaaacctttgctaattatatattatacagggaaaca 384

                                                                       
Query: 185 tatcaagaaccttaaaaattaaacaacacagaacccctcccccaaattttctaatcaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatcaagaaccttaaaaattaaacaacacagaacccctcccccaaattttctaatcaata 444

                                                                       
Query: 245 agtagattaatgaacaaaatagttttcaaaataagaagcaataatggccaaaaagtcttt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtagattaatgaacaaaatagttttcaaaataagaagcaataatggccaaaaagtcttt 504

                           
Query: 305 ggaaattgttcaacat 320
           ||||||||||||||||
Sbjct: 505 ggaaattgttcaacat 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_i19.g1 MSMg01no311_i19.g1 CHROMAT_FILE:
MSMg01no311_i19.g1 PHD_FILE: MSMg01no311_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:26 2005
         (290 letters)



>mm_chr12_30407564_30408253
          Length = 690

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccatgaactttcagaattaatctaccaccttgtataacaagcagagactgtatacatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acccatgaactttcagaattaatctaccaccttgtataacaagcagagactgtatacatc 431

                                                                       
Query: 61  catctggaagctaccacaagagtcctttctgctccttgatccttggccagtgctatactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 catctggaagctaccacaagagtcctttctgctccttgatccttggccagtgctatactg 371

                                                                       
Query: 121 ggtacatgtctagacaataccaggatccatgctctgggtagtatagtctgtgattgctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggtacatgtctagacaataccaggatccatgctctgggtagtatagtctgtgattgctac 311

                                                                       
Query: 181 ctcccagcttgcctctgtctgttttgtttcctttttgtgggaaataactccatagcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctcccagcttgcctctgtctgttttgtttcctttttgtgggaaataactccatagcttcc 251

                                                             
Query: 241 taaggaaaggatcttggaggataatgttttcaaaatatttttaaatatta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 taaggaaaggatcttggaggataatgttttcaaaatatttttaaatatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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