BAC Information

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BAC

Clone NameMSMg01-312B01
Chromosome12 (Build37)
Map Location 84,753,218 - 84,753,752
singlet/doubletsinglet
Overlap geneDpf3
Upstream geneRgs6
Downstream geneWdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312B01.T7 (MSMg01no312_b01.b1)MSMg01-312B01.TJ (MSMg01no312_b01.g1)
ACCAG434387AG434388
length713722
length of high quality
(start - end)
535 (128 - 662)---
definitionCHROMAT_FILE: MSMg01no312_b01.b1 PHD_FILE: MSMg01no312_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:04 2005CHROMAT_FILE: MSMg01no312_b01.g1 PHD_FILE: MSMg01no312_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTTTAGCAGGGCTACCACTTGGTCCTGGTCTCTGCTTCCTCACT
CGAAAATTCCTTTGGTTTTTTCTACGAGGTGTGAGTTCACTCAGGATGAA
GACATACCAGGATCTTGTATGGGTTCAGATTCAGGGGTGAGGGGACTGCT
CCCCTCTCTGTGTCATGTTTGAGCCATTCTCAAAAGGCCTCCAGAAAATG
GATAGTGCAGTGTGTCTGGGGAACCCAGTATCCTGGATGGTGGGAGTTGC
TATTGTCACCTCTCCTCTCCAGGACTCATATCCTTAGGCCCTCTGAAGGG
TCAGGGCTCTTGCCTGTCTGCCTCTGACCATCTGTCATCTTTTGCTTTGT
TTGGTCATCGTGGCCCTGCCCCTGCCCCTAACTTAGAAAAGATGAGCCAG
GGCCAAGCCTGGCTGCCTTGTCTCCTGGCCAGCAGTGCATGCTGCTTTGC
GTCAGCAGAAAAAGTGTCCCCTGCCAGCCACATTCTAGAGCACACTGTCC
CTTGCAGCCCTAGCCTGAGAGGACTCTGTGCCGCGTCCCTGCTTGCTGGC
CTGAGTTTGGTCTCTCTCTGCCCATATACCTGGTGACTCGGGAACCTCAA
AATATGGCTTGGTGGCCCAGCGACTTCAGGCGATGTGTTCAGGGTTTGTC
TTCCATGCCTGTT
ACGCCCCCGGAGGCGNCCGGGGCGTTTTCGNGAGGGGGGNNCNAAGAAGG
TTCCTTNAGGAGGGGNNNAAAGGAGANNNNNNNNNNNNNNNAAGANNNNT
TTTTTCAAGGAGGAAGAAGGGNNANNNNNNNNNNANNNNNNNNAANANNA
AAGNAAAAANNNANNAAAGGNNAAAAAGAAAANGAAAAAAAGAAAGAAAA
AGGGGGGGGGGAGAGAGAAAAAGGGGGAGTTTTTTTGAGGAAAGGGGGGG
GGNGGTGGGGAAGGAAGAAGGAGAAAAGGAGAAAAAAGAGAAATTTTTTG
TGGATGTTAGAAGGAGGAGAAGAAAAAAGGAAGNATTTTTTTTTTTCCCC
CCCCCCCCCCCCGAAAAGAGAGAAGAAAAAGGGGAGAGGGGNNNNAAAAA
AAAAGAAAAAAAAAAGGGGGGGGGGGGGGGGGGGGNNNNANAGAAGNAAA
GAGGAAGGAGAGGAGAAAGGGAAAGAAAGAAGGAGAAAAAGAGGAAGAGG
GGAAAAGAGAGAAAGGGAGGGAGGAAAGGAAAGAGAAGAGGAGAGGGGAA
GGAAGGAGAGGAAAGGAAAAAAAAAGAGGAAGGGAGAAAAGGGAGGAAAG
AGAAGGAAAAGAGAAGAAAAGGGAGAAGAGGAGAAAGGGGAGAAGAGGGG
AAATTTTTTTTTTGTTTTTATAAAAAGAGAGATAACAGGTTTTATTTTGT
TATGTATTTTGTGTATTATGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_b01.b1 MSMg01no312_b01.b1 CHROMAT_FILE:
MSMg01no312_b01.b1 PHD_FILE: MSMg01no312_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:04 2005
         (535 letters)



>mm_chr12_84753018_84753952
          Length = 935

 Score =  988 bits (511), Expect = 0.0
 Identities = 529/535 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgtgagttcactcaggatgaagacataccaggatcttgtatgggttcagattcagggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ggtgtgagttcactcaggatgaagacataccaggatcttgtatgggttcagattcagggg 676

                                                                       
Query: 61  tgaggggactgctcccctctctgtgtcatgtttgagccattctcaaaaggcctccagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 675 tgaggggactgctcccctctctgtgtcatgtttgagccattctcaaaaggcttccagaaa 616

                                                                       
Query: 121 atggatagtgcagtgtgtctggggaacccagtatcctggatggtgggagttgctattgtc 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 615 atggatagtgcagtgtgtctggagaacccagtatcctggatggtgggagttgctattgtc 556

                                                                       
Query: 181 acctctcctctccaggactcatatccttaggccctctgaagggtcagggctcttgcctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 555 acctctcctctccaggactcatatccttaggccctctgaagggtcagggctcttgcctgc 496

                                                                       
Query: 241 ctgcctctgaccatctgtcatcttttgctttgtttggtcatcgtggccctgcccctgccc 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctgcctctgagtatctgtcatcttttgctttgtttggtcatcgtggccctgcccctgccc 436

                                                                       
Query: 301 ctaacttagaaaagatgagccagggccaagcctggctgccttgtctcctggccagcagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ctaacttagaaaagatgagccagggccaagcctggctgccttgtctcctggccagcagtg 376

                                                                       
Query: 361 catgctgctttgcgtcagcagaaaaagtgtcccctgccagccacattctagagcacactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 catgctgctttgcgtcagcagaaaaagtgtcccctgccagccacattctagagcacactg 316

                                                                       
Query: 421 tcccttgcagccctagcctgagaggactctgtgccgcgtccctgcttgctggcctgagtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcccttgcagccctagcctgagaggactctgtgccgcgtccctgcttgctggcctgagtt 256

                                                                  
Query: 481 tggtctctctctgcccatatacctggtgactcgggaacctcaaaatatggcttgg 535
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 255 tggtctctctctgcccatatacctggtgactcgggaacctcaaaatacggcttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)