BAC Information

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BAC

Clone NameMSMg01-312D22
Chromosome12 (Build37)
Map Location 41,671,008 - 41,671,327
singlet/doubletsinglet
Overlap genenone
Upstream geneArl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4, LOC638487
Downstream geneLOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-312D22.T7 (MSMg01no312_d22.b1)MSMg01-312D22.TJ (MSMg01no312_d22.g1)
ACCAG434517AG434518
length739809
length of high quality
(start - end)
324 (40 - 363)57 (69 - 125)
definitionCHROMAT_FILE: MSMg01no312_d22.b1 PHD_FILE: MSMg01no312_d22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:16 2005CHROMAT_FILE: MSMg01no312_d22.g1 PHD_FILE: MSMg01no312_d22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:53:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TCTTCATGCAAATGAAGCATTCCCAGCACCTCAGCTTCAACCAATAACGT
ACCTTTAAGACGCTTCCCAAGGTTTGTATAGCCTTTGTTTCCCCCAATAT
AGAGAGCTGTTTCACTGAAAACCATCTCCAGAGAAGGCTGCTTCTCCTGC
CTTCCACCATCCAAAATCGTCTTAACCCACCAAGGCAGCTAAGCTTCGCT
CCCTCCAGCTGAGCCCAGTGCACAATGCGCTTGGATACCCCAAGGGGAGA
AGCAGGCTAGGAGTGGTGAAAATATAATCATGTTTGGTTTATACTCATGG
TTTTTAGAAGTATTTTTCAGAACCTCCGCCTTAGCTTCTGCATTAGAATA
TCTAACTCTGGAGGGACTCCAACATGAAATTTCAACTAGGATCTCAGACG
ACTCTTGTTATAGGTAACCTGAACAGACCTCACTCAAGAAGCCCTAATAT
CTACATGCCGGGTGCTCTTCGCCAGCTAGGATAATGGGTTGAGATGACAG
CATGTCAACATAGGACTAAGTTAGATAATCTGTCCGATGTCAGCAGAGAG
CATAAAAATACAGTCAGCAGAGGGTGGAGGCTGTGTTGACTTTTCATCGA
CATGCCTGGGAGAAGTAGTTTATAGAGAAGAAGGAGCCAGAGTTTCAGAG
GCTGCAGGCTATAATCGACTAGCTCCGTTGTTTCTGGAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTAAAAGAGAAAGACCAACCGAAGGTTCTTTG
GGGGGTGAAGGTGGGGGTAGGAGGTTGTNTNNTTNNNNTTTTCNTTTTTT
TTTTCCCCTTTTCCCTNNTTTTCCCTGTACCTTTTTCCCCTTTTTTACCT
TCCCTTTTCTTCCTTTCTTTCCATTTTTTTTTTCCTCCTCCCTCCTTTTT
CTTCTTTTTTCCACCTTCCTTTTCCTTTTCCTCCCATTACCCATTTCCAA
AACTTCATTATTTTTTTTTCCTTTACCTTGCCCTACCACAACCAAAAAAG
ACCTTCAGTAATTCTCAAAAGCAAGAACCCTTTTGTTTTTTTTTAGAATA
ATGGATGAGGCACCCCCCCCCTTAAAAAAAAAAAAAAAAAATGTGGGGGG
GGGGGGTGTGTCCACTCTTTTCCCTTCCCCCTTTTTTCCCCCTCCCTCGC
CCATCTACTTTAATGTTATCCTCTTTTTCCAATGATCTATTTTTCCATGA
TTTTAAACTTTAAACACGTCCCACTTTTCGCATTATATTTTCATATATAT
ACATTTCCTATTAACCCCCCCTCTCCCTTTCCCTCCTTTCCACTTCCCTA
TTAATTCATTAAATAATTCCCAATTTTTAATTAACTTCCATTTCTTTTGC
ATTTTCCTGGCACTTATCACACTTTCTCCCTTTCTCCACTTTCTTTTCAC
ACCTCCCCACACCCACATTTTTCCCCTCCAATTCCACACCTCCCTCTCAA
CCACTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no312_d22.b1 MSMg01no312_d22.b1 CHROMAT_FILE:
MSMg01no312_d22.b1 PHD_FILE: MSMg01no312_d22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:53:16 2005
         (324 letters)



>mm_chr12_41670805_41671528
          Length = 724

 Score =  619 bits (320), Expect = 0.0
 Identities = 320/320 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatcttcatgcaaatgaagcattcccagcacctcagcttcaaccaataacgtac 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatcttcatgcaaatgaagcattcccagcacctcagcttcaaccaataacgtac 263

                                                                       
Query: 64  ctttaagacgcttcccaaggtttgtatagcctttgtttcccccaatatagagagctgttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctttaagacgcttcccaaggtttgtatagcctttgtttcccccaatatagagagctgttt 323

                                                                       
Query: 124 cactgaaaaccatctccagagaaggctgcttctcctgccttccaccatccaaaatcgtct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cactgaaaaccatctccagagaaggctgcttctcctgccttccaccatccaaaatcgtct 383

                                                                       
Query: 184 taacccaccaaggcagctaagcttcgctccctccagctgagcccagtgcacaatgcgctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taacccaccaaggcagctaagcttcgctccctccagctgagcccagtgcacaatgcgctt 443

                                                                       
Query: 244 ggataccccaaggggagaagcaggctaggagtggtgaaaatataatcatgtttggtttat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggataccccaaggggagaagcaggctaggagtggtgaaaatataatcatgtttggtttat 503

                               
Query: 304 actcatggtttttagaagta 323
           ||||||||||||||||||||
Sbjct: 504 actcatggtttttagaagta 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)