BAC Information

Click to search

BAC

Clone NameMSMg01-317K11
Chromosome12 (Build37)
Map Location 12,929,033 - 12,929,326
singlet/doubletsinglet
Overlap geneLOC100043215
Upstream geneLOC100043209, D12Ertd553e
Downstream geneMycn, EG668473, LOC628449, Ddx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-317K11.T7 (MSMg01no317_k11.b1)MSMg01-317K11.TJ (MSMg01no317_k11.g1)
ACCAG437662AG437663
length773766
length of high quality
(start - end)
295 (74 - 368)---
definitionCHROMAT_FILE: MSMg01no317_k11.b1 PHD_FILE: MSMg01no317_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:41 2005CHROMAT_FILE: MSMg01no317_k11.g1 PHD_FILE: MSMg01no317_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:59:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTAAGTACTGACCAGCTAGGACAGTCATCACCCGAGGTACTTACA
GCCTGGAAGAAGGAGCCAGAGGCCACCACTATGTGTCACTGTGCAGTAAA
CAGTGTGCAGGGGATCTGAGGATTCAACTGGGCAGATGAGGGTTCTTTTC
AAAGGGTCTTTCACCAATAGTGTGTTGAGGGGAGGGTCTCGGAGAAGGTG
ACAGCCCGCAGAGGGAAGCCAATGACTCAGAGGGGCAGGAATATGGTGTT
AAACTGGGCATGGGTGGCACACTGATGTAAGTAACCCTTAGCACTTGTGA
GGCTGGAGCATGCCTCATTTTTTAAGCCAGCCTGGCTATGAACTGAAACC
CCTGTCTCAAGCAAAATGTCCCCCCACCCGCCTCAGACTCCAAAATAGTG
TCGGAGGATCAACTTCGCAGGAAGGCTTAGGAGAACCACTTCTGCCTGAA
TCAGTTCCTGTGCTAAATATCCTGATAAGAAAGCAACTGAGGGGAGAAAG
GATGATAGTCCATCAAGGCAGGAACTGGAAGCGACTGGTCACTTCCCATT
CGAGCCTAGCAACAGAAATAAAAGCAAGCGCAAAGGAACTTCCTGCTCCC
CTCCATCCTTCTCACTCTTAGACCATCCAGGGTCCCTCTCAAGGAAATGG
GGCCACCCCAAGTCAGCCTGTGTCTTCCTACTTCAATTAGCCACCTTAGA
AAACTCTCACAGGTATGACCGCG
TTCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTTCACCGGAATTCAGATATTCTCCCANGGACGGCTCCA
AGGGAAGGGAAGGGATGGCCCCGGAAGGGAAGGGAAGGNAAGCCCCCNNN
NCCTCTTTTTTTCTTTTTCCCTTTTTTTTTTCCCTCCCCTTCCTTTTTTC
CCCCCCTTCCCTCTTTTCCCCCTCCCCTTTTCCCCCCTCTTCCTCCTTTT
TCCCCTCCTCCCCCTCCTCTTTCTTCCCCCCCCTTTTTCCTCCTTCCTCC
TTTTCTCCTCCCCCCCCCCCCCTCCCCGCTTCTCTTTTTCTTTTCCCTCC
CTCCCTTTCTCTTTTCCTTTCCTTCTCCCTCCCCCCCTCTTCTTCTCTTT
ACGCCTTTTCCTCTCCTTTTTTTCCCCCCCTTTTTCTTCCCCCTTCTTTT
TTTTCTTTTCCCCCCCTCCTTCTCTTTTCTTTTTTCTCCCCCCCCCTTTT
TTTCCCCTCCCCCTTTTTCCCCTCCTCCCCTCCCTTTTTCCTCCCCTTTT
TCTTTCTCTCTCCCTCTCTCCTTCCCCCCCCTTCCCCTTCTTCTCCCCTC
TCTTTTCCCCCCTCCTTTTTTCTCCCTCTTTTCTCCTTTCTTCTCTCTCC
TCTCTCCCTCCTTCCTCTCCTCTCTTCCTTCCCCTCTCTTTTTCCTCTTT
TTTTTCCCTTCCCTTTTTCTCTCTCCCTCCCCCCTTTTTCCTTCCCCCCT
CTTCTCCTCCCCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no317_k11.b1 MSMg01no317_k11.b1 CHROMAT_FILE:
MSMg01no317_k11.b1 PHD_FILE: MSMg01no317_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:59:41 2005
         (295 letters)



>mm_chr12_12928833_12929527
          Length = 695

 Score =  522 bits (270), Expect = e-153
 Identities = 288/294 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggacagtcatcacccgaggtacttacagcctggaagaaggagccagaggccaccactatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 494 ggacagtcatcacccgaggtacttacagcctggaagaaggagccagaggccaggactatg 435

                                                                       
Query: 61  tgtcactgtgcagtaaacagtgtgcaggggatctgaggattcaactgggcagatgagggt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 434 tgtcactgtgcagtaaacagtgtgcaggggatctgaggattcaactgggcagacaagggt 375

                                                                       
Query: 121 tcttttcaaagggtctttcaccaatagtgtgttgaggggagggtctcggagaaggtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tcttttcaaagggtctttcaccaatagtgtgttgaggggagggtctcggagaaggtgaca 315

                                                                       
Query: 181 gcccgcagagggaagccaatgactcagaggggcaggaatatggtgttaaactgggcatgg 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gcctgcagagggaagccaatgactcagaggggcaggaatatggtgttaaactgggcatgg 255

                                                                 
Query: 241 gtggcacactgatgtaagtaacccttagcacttgtgaggctggagcatgcctca 294
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtggcacattgatgtaagtaacccttagcacttgtgaggctggagcatgcctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)