BAC Information

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BAC

Clone NameMSMg01-318G08
Chromosome12 (Build37)
Map Location 80,646,865 - 80,647,189
singlet/doubletsinglet
Overlap geneRad51l1
Upstream geneGphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26
Downstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318G08.T7 (MSMg01no318_g08.b1)MSMg01-318G08.TJ (MSMg01no318_g08.g1)
ACCAG438210AG438211
length721723
length of high quality
(start - end)
329 (42 - 370)301 (71 - 371)
definitionCHROMAT_FILE: MSMg01no318_g08.b1 PHD_FILE: MSMg01no318_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:34 2005CHROMAT_FILE: MSMg01no318_g08.g1 PHD_FILE: MSMg01no318_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAGGGGTATACCGCATGAAATTCTATTCACAAATACTCAGTGGTGTTTT
CCATAAACTTAAGAAAGGATATTTTCTAGGTGCCAGAAAGGAATTCAGCC
TATCCACAACTACCTGTCTGTACATGTGTCACAAGTGTCTCATATGGGCG
TGCACACCCATACCCATGCGGCTGTGCATGTGCAGGCATGTCGATATTTT
GTTCTAGTTTTATTAGCATGGTCCTTGATGCTGGGCCATACCCAGAGTGC
TCTGATTACATACACTTCACTGGTTCCTTGTTAGAAAAGCCCATCTTTCA
AACTTAAGTATATTTCCTCAACGCTCCATTTTATAAAGAACAAGCAAGTA
GTCATATGTGGCTATCCCCCCCCTCATGAGAAAAAAACAAAAAAACTTCA
ATCAAGTCCATTTACAAGAAGAACATACAGAAGATCGCTTTAATTTTGGC
TTCATCACGAAGCTTCTCCAAGCCATGTAAAGTGAGTGGGACAGGAGTAA
GGGGCAGAGAGAAAAGGAGAAATGGAAACAAAGGGCAAGCACACTTTAAA
AAGTTCCTGGCAACACATATAAACAAGCAAACAAAGAAAAATATGTCCAG
TCTTATAGTCAGGTGCGATGGGAATCCCCTGTAGCCCAGCACTATGGAGG
CAGACAGCATGAGTATGAAGC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTACCCCCTTTATGTATTGTCTAATGGTT
GGTGCACCAATCACGTGTCAATTCATGTATGTTTTCTGTCTCATTGTCTG
AATGATTGTTTCCTTGTCTGAATGACTGACTGTTTTATGTTTCATGTTAA
AAAGAAAAAAAAATGGTTAAAACTTTACCTGCTAAATCACTCTCAGTTGC
ACAATAGAGGCTGAGAGGCCCTCACTTTAGCCAAAATTCAAGCACAGCAG
GAGAGGTCCTGCTAAAAAACTTGTCTTTAAAGAAAAGGAGTCTGCAACCT
CTTAGTTCTAATACAAATAACCTGATAGTTGTTTTTCCTAAAAAATTCTC
TGCAAGTTTGTGATTACCGCCCCCAGCAAATTACAAAGTGTTTTTTATCT
TATAGTATAGCTATAAAAAAAAATTCTTTGATCTAAATTTATAAGATTCG
TGTAGCCACTTCATTTGGTTTTTGACTGGTCTTAAAGGTATAAATATGAT
CTACATATCTTGGTCATAGAAAATTGGCTTTTAAGTTATTTGGGTATGAT
TAAAAAGATGTATCACTGGTTATAAAGTTAACTTAAAAGTAGTAACTCAG
GTCCAGAGTCATTTTGAAACAAAAGCACCTGGCATAAACCAGCCCAAATA
ACTATTCCTCTAAAGATACTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_g08.b1 MSMg01no318_g08.b1 CHROMAT_FILE:
MSMg01no318_g08.b1 PHD_FILE: MSMg01no318_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:34 2005
         (329 letters)



>mm_chr12_80646661_80647389
          Length = 729

 Score =  584 bits (302), Expect = e-171
 Identities = 320/326 (98%), Gaps = 2/326 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggggtatacc-gcatgaaattctattcacaaatactcagtggtgttttccat 63
           |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggggta-agcagcatgaaattctattcacaaatactcagtggtgttttccat 263

                                                                       
Query: 64  aaacttaagaaaggatattttctaggtgccagaaaggaattcagcctatccacaactacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaacttaagaaaggatattttctaggtgccagaaaggaattcagcctatccacaactacc 323

                                                                       
Query: 124 tgtctgtacatgtgtcacaagtgtctcatatgggcgtgcacacccatacccatgcggctg 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 324 tgtctgtacatgtgtcacaagtgtctcatatgggcgtgcacacccatacccatgtggctg 383

                                                                       
Query: 184 tgcatgtgcaggcatgtcgatattttgttctagttttattagcatggtccttgatgctgg 243
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcatgtgtaggcatgtcgatattttgttctagttttattagcatggtccttgatgctgg 443

                                                                       
Query: 244 gccatacccagagtgctctgattacatacacttcactggttccttgttagaaaagcccat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gccatacccagagtgctctgattacatacacttcactggttccttgttagaaaagcccat 503

                                     
Query: 304 ctttcaaacttaagtatatttcctca 329
           |||||||||||||||| |||||||||
Sbjct: 504 ctttcaaacttaagtagatttcctca 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)