BAC Information

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BAC

Clone NameMSMg01-319D10
Chromosome12 (Build37)
Map Location 109,721,345 - 109,898,863
singlet/doubletdoublet
Overlap geneEml1, Evl
Upstream geneLOC100041251, LOC100040497, LOC668151, Bcl11b, Setd3, Ccnk, EG668158, 1600002O04Rik, Cyp46a1
Downstream geneDegs2, LOC668164, Yy1, Slc25a29, AI132487, Wars, Wdr25, BM948371, LOC668194, Dlk1, Gtl2, Rtl1, 6430411K18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319D10.T7 (MSMg01no319_d10.b1)MSMg01-319D10.TJ (MSMg01no319_d10.g1)
ACCAG438800AG438801
length722728
length of high quality
(start - end)		291 (72 - 362)345 (73 - 417)
definitionCHROMAT_FILE: MSMg01no319_d10.b1 PHD_FILE: MSMg01no319_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:31 2005CHROMAT_FILE: MSMg01no319_d10.g1 PHD_FILE: MSMg01no319_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,898,573 - 109,898,863)(109,721,345 - 109,721,686)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCCACTTATCTTCCTCTGTCTACAAAGATGGGCCAAGTGAAGTGTTC
ATAAATAGTTCTGATGAAGGTGTGCTATCCTTACAGTTTGCTAGCTACCA
GACAAGCAGAGTCAGTCCTTTGGGAGACAGTGTGATGGGCAGAGATCTGG
ACTGCACACTGAAGTCTTTATCATTAGTGTGGTATTCAGCAAATTATGGA
CTGCTATGAGCCTTTGTTTTCTTGTCTTTAAAGAAGAGGCAAGAATTCCT
AACCTCTCTAGAGAACTCAGGCGATACTATGACGATGCAGGGAGGAGATG
TACAATGGCAATGTGTTTAGGGACGCTCTTGTCTTTCTCTAAGGCACTTC
TTATAGTCCTAGCGGCCCCACACTACCAATGTGAGTCGTCAAGGGGGACC
GGAGCCCCAGAGATTGTGTATGACAGCGCTTCGATCCTTAAGCCTCCCTC
CTCTTGTCACTTTACGTGTGCATGTATGGAAGCTAGAGCACAGCTTTCAG
GAGCTGGTTCTTTCCTTTCACCACTGTGGGTCCTGTGGACTGAACTATGG
TTGCCAGACTTAGCAGCAAGCACCTTCCCTTCCTCAACTAAGCCATCTCA
TCAGCCCTTGTGTCCACTTCCAAGATAAGGAAAGTAAGACTTGTCCTGTG
GGCATTGCGAAATAGATGTGTG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGACACGTAAATGAAATACAAGAAGC
CGCTTTCTCTTCAGACTTAGAAGTTTGGGGTCACGCGCAGGGACAGACAA
GCAGACAGGAAGAAATGCCAGTGTTTATGCATAGCCCCTAAAACACCCAA
TCTCCCTCAAGGACCCAGAGATGAGCTGTGTTATTGTGAGGCCTCTTGCA
AGCTGGTACCCCTGCCATGTCCCAAATAAAGGACATTGTTTTCCCTTGCT
GTCCAGAGGGACTGTAAGGTCTTTGATATTCCCTGCTGGTGATTAAAAGG
AGCTTCCTGCAGCGAGTTGACAACCAGCCGCACTCTCTCTGGCTGCCCTT
GTTACTGCAAGTCTCCCCCCCTTTTGTTTTCAGTNCTTTCATCTGGAACC
CTCTGAAATCCCTCTTTAATTCATAAGTGCTCTTGGTTCTCTAAAGGAAA
GTTTTATTTCTTTTTTCTTCTTCTTCTACAAATAGGACAATAGTAACTTT
TCTTTTTAAACTTTAACATTTGGATGCAAATGTGGGCATGACAAATGTCC
TGAAAGAGCCGTGATGGATTATACCCGAGCTGTGTGTGCAAAGCAAGGTG
TCTTGGAAGGTTTGAAGCCTGCAGTTGCCTGAAAGTTTTTACAAAACTTT
CCCACTGGAACCTGAGGAACCTGGCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_d10.b1 MSMg01no319_d10.b1 CHROMAT_FILE:
MSMg01no319_d10.b1 PHD_FILE: MSMg01no319_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:31 2005
         (291 letters)



>mm_chr12_109898509_109899199
          Length = 691

 Score =  547 bits (283), Expect = e-160
 Identities = 289/291 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacaaagatgggccaagtgaagtgttcataaatagttctgatgaaggtgtgctatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tctacaaagatgggccaagtgaagtgttcataaatagttctgatgaaggtgtgctatcct 296

                                                                       
Query: 61  tacagtttgctagctaccagacaagcagagtcagtcctttgggagacagtgtgatgggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tacagtttgctagctaccagacaagcagagtcagtcctttgggagacagtgtgatgggca 236

                                                                       
Query: 121 gagatctggactgcacactgaagtctttatcattagtgtggtattcagcaaattatggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 gagatctggactgcacactgaagtctttatcattagtgtggtattcagcaaattatggac 176

                                                                       
Query: 181 tgctatgagcctttgttttcttgtctttaaagaagaggcaagaattcctaacctctctag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tgctatgagcctttgttttcttgtctttaaagaagaggcaagaattcctaacctctctag 116

                                                              
Query: 241 agaactcaggcgatactatgacgatgcagggaggagatgtacaatggcaat 291
           |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agaattcaggagatactatgacgatgcagggaggagatgtacaatggcaat 65


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no319_d10.g1 MSMg01no319_d10.g1 CHROMAT_FILE:
MSMg01no319_d10.g1 PHD_FILE: MSMg01no319_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:31 2005
         (345 letters)



>mm_chr12_109721145_109721889
          Length = 745

 Score =  654 bits (338), Expect = 0.0
 Identities = 341/342 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgacacgtaaatgaaatacaagaagccgctttctcttcagacttagaagtttggggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgacacgtaaatgaaatacaagaagccgctttctcttcagacttagaagtttggggtc 260

                                                                       
Query: 61  acgcgcagggacagacaagcagacaggaagaaatgccagtgtttatgcatagcccctaaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acgtgcagggacagacaagcagacaggaagaaatgccagtgtttatgcatagcccctaaa 320

                                                                       
Query: 121 acacccaatctccctcaaggacccagagatgagctgtgttattgtgaggcctcttgcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acacccaatctccctcaaggacccagagatgagctgtgttattgtgaggcctcttgcaag 380

                                                                       
Query: 181 ctggtacccctgccatgtcccaaataaaggacattgttttcccttgctgtccagagggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggtacccctgccatgtcccaaataaaggacattgttttcccttgctgtccagagggac 440

                                                                       
Query: 241 tgtaaggtctttgatattccctgctggtgattaaaaggagcttcctgcagcgagttgaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtaaggtctttgatattccctgctggtgattaaaaggagcttcctgcagcgagttgaca 500

                                                     
Query: 301 accagccgcactctctctggctgcccttgttactgcaagtct 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accagccgcactctctctggctgcccttgttactgcaagtct 542


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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