BAC Information

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BAC

Clone NameMSMg01-319J11
Chromosome12 (Build37)
Map Location 33,754,246 - 33,754,583
singlet/doubletsinglet
Overlap gene1110049B09Rik
Upstream genePik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109
Downstream geneAtxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319J11.T7 (MSMg01no319_j11.b1)MSMg01-319J11.TJ (MSMg01no319_j11.g1)
ACCAG439068AG439069
length728728
length of high quality
(start - end)
277 (43 - 319)348 (69 - 416)
definitionCHROMAT_FILE: MSMg01no319_j11.b1 PHD_FILE: MSMg01no319_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:57 2005CHROMAT_FILE: MSMg01no319_j11.g1 PHD_FILE: MSMg01no319_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:01:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTATACCTTTTCATGGGGTATTTGATTAATTCTTTCTACAGGCCCCAT
TATTCATGCTGTGATGAAATCCCATTTTATAGCTCTTAATACATGGACCC
AATTTATCCACATCACATTGTATTCTAATACTTGTCACCCAAGTTATTAG
CTATCTCCTTCTCAGTGTAAAACCATCAGCAAGTTTGATTAGCTTATTCC
CTAGGGATGATGGGGAGATAAGAGAGACACAGAGAAGTATGGCCGCCGAC
GGCTCTGTGTCCTCAGAGCACTGCTACCCAGCACCCTCGGAAGAGAACCG
GGTGGCCACGTTGATCCTCCTCCACCCACGGAAGGAGCTCTCAGTAGGAC
CCAGGTTGCAAAGCCCCCACTGCAAAACCCCCTGAATTCGAGTCAACCTC
CTAAATGGAGCCATTTTTGGTGTCTTCCTGTTATCCTCCTCCACTGGCCA
GAAGGCTCTTGGGGTAAAGTTCCTGCCCTCCCAAGCACCGGAAAAGCAGG
CTTGATGCGGTCTGCTGCTCTTGCCCAAAAGAGCCGTCTCTCTCAGCAGC
CATCCTCTTCCTCTTCTCAGGAATAAATCACAGCCTTGACACTCACCAGT
GGCTACGGTTCCTTCTGAACAATCACCTGTCAAGACCTGAACAGAAGTAA
AAAGGGGACTGCCTGGATCCTAGAGTTG
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACGATGTTAAATATGAGGGGCAATAAGAACAT
ACTTTATAACCCTTTATTTCTTGCAAAGAGCTCTTAGGTTAAGAGGTTTC
TTTATCTATGGCTAAGATGAGAGGTGATCTATCCCCAAGGCCTTAGACTG
TGAGCCCAATAGGCAGTGGGGGATTTAAAACTAGAATTATGGGGCCCAAA
GTCTAGGGTCAAAGATGCACAGCCAAGGTCTCTAACCAACAATGTGGTGT
GTGATCAACGTGGAGTTCCTAGGACCAAAAAAGAGTGACCCAAAAATAGA
GTAAAGGTTTCATCTTGGGCCAATATACAGTCTTTAAACCATGTTTAAGA
AGTATTTACTTCCCCCCCGCCACATAATGATATCTTTCTAGTTGTAATGA
GCATACAGTTACACAAAATGGAAGAAGACAGAAAAAATATTAAAAGTCAC
TAACTGAAATCCATGTGTGAAAGCTCATCATTTTGATGGATTACTTCCTG
TTCTTTCTGTGCAAACACACACCTTCCAAAATCTCAAGATGATGTGATAA
TCGAATGGCAATATTGTTTTCTTTTTATTTCTGTCGTGAGCATTTCCTCA
TAGCCCTGTGTCTCCTATCAACCTGGATCACCTTCTGAGATCAGAAGAGA
CCCAGTGTGGCCTGTATGTGATGCGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_j11.g1 MSMg01no319_j11.g1 CHROMAT_FILE:
MSMg01no319_j11.g1 PHD_FILE: MSMg01no319_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:01:57 2005
         (348 letters)



>mm_chr12_33754046_33754788
          Length = 743

 Score =  594 bits (307), Expect = e-174
 Identities = 332/343 (96%), Gaps = 5/343 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgatgttaaatatgaggggcaataagaacatactttataaccctttatttcttgcaaag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 201 acgatgttaaatatgaggggcaataagaacacactttataaccctttatttattgcaaag 260

                                                                       
Query: 61  agctcttaggttaagaggtttctttatctatggctaagatgagaggtgatctatccccaa 120
           |||||||||||||||||||||| |||||||||||||     ||||||||||| |||||||
Sbjct: 261 agctcttaggttaagaggtttccttatctatggcta-----agaggtgatctttccccaa 315

                                                                       
Query: 121 ggccttagactgtgagcccaataggcagtgggggatttaaaactagaattatggggccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggccttagactgtgagcccaataggcagtgggggatttaaaactagaattatggggccca 375

                                                                       
Query: 181 aagtctagggtcaaagatgcacagccaaggtctctaaccaacaatgtggtgtgtgatcaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 376 aagtctagggtcaaagatgcacagccaaggtctctagccaacaatgtggtgtgtgatcaa 435

                                                                       
Query: 241 cgtggagttcctaggaccaaaaaagagtgacccaaaaatagagtaaaggtttcatcttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cgtggagttcctaggaccaaaaaagagtgacccaaaaatagagtaaaggtttcatcttgg 495

                                                      
Query: 301 gccaatatacagtctttaaaccatgtttaagaagtatttactt 343
           ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 496 gccaatatagagtctttaaaccatgtttaagaagtatttactt 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 743
Length adjustment: 9
Effective length of query: 339
Effective length of database: 734
Effective search space:   248826
Effective search space used:   248826
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)