BAC Information

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BAC

Clone NameMSMg01-319P12
Chromosome12 (Build37)
Map Location 38,119,786 - 38,120,124
singlet/doubletsinglet
Overlap geneA530016O06Rik
Upstream gene4930579E17Rik, LOC638858, Meox2
Downstream geneLOC100043139, Dgkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319P12.T7 (MSMg01no319_p12.b1)MSMg01-319P12.TJ (MSMg01no319_p12.g1)
ACCAG439335AG439336
length719719
length of high quality
(start - end)		367 (44 - 410)342 (73 - 414)
definitionCHROMAT_FILE: MSMg01no319_p12.b1 PHD_FILE: MSMg01no319_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:23 2005CHROMAT_FILE: MSMg01no319_p12.g1 PHD_FILE: MSMg01no319_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCGGTTTAGCTCTGTACCCCATTTTTAATTGGGTTATTTGGTTTTTT
GGAGGTTAACTTCTTGAGTTCTTTAAATATTTTGGATATTAGTCCTCTAT
TGGATGTGGGGTTAATGAAGTTTTTTCCCCAGTCTGTAGGTTGCTGATTT
GTCCTATTAATGGTGTCCTTTGCCTTACAGAAGCTTTTCTGTTTTATGAG
GTCCTATTTATTGATTGATGATCTTAGAGTCTAAGTCATTGGTGTTCTGG
TCAGGAAATTTTCTCTTGTGCCAATGAGTTTGAGGTTCTTCCCCACTTTC
TCTTCTATTATATTCAGCGTGTCTGGTTTTATGTTGAGGAATCTACTTTG
ACTTGAGCTTTCCCCCACCCCACAAATATGGATCTATTTTCATTCTCTTA
CATACAGAACAACACCATTTATTGAAGGTACTTTATTTTTACTACTGTAT
GTTTTCAGCTTCTTCGTAAAAGATCAAGTGTCCAGAGTTGTGTGGGTTTA
CTTCTGCATCTTCAATTCTATTCCATTGATCGACATGTCTACTTCTCTAC
GAATACCATGCAGTTCTGATGACTATTGCTTTGTTAGACAGCTTGAAGTC
AAGGATAGTGATTTCTCCAGAAGTTTGGTCCGAGTTGTTTTGGTTAATTT
TGTGATTATTTTTTTCCCT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGTGTTACCTGGCAATTTGTAAATAAT
TTCTTGAGAATCTTCATATCGTACCTATATTCACAATCAATGTCTTAAAC
AAATAAAACATTGGCCAGCTTCCTGTTTCATCTAATGATTTGTCTGGAAT
GATTTTACTGTGGTGAAATAAAATTCATGTAATAAATCCACTAATCAAAT
ATGTATCATTAAATGATCGTATGTTTCCCATTTCCTGACTGTATTCCATA
ACCCGAAAAACATCACTTTTTTTTTTCCCAATTCAAACTGAATAGTCATT
TGGAGCAGGAACTGTTAAAACAACAGCAACAATTGTCATTAATTTTCATA
TTTTAAATTATGCCCCCACCCCCTAACTTATTCTTCCCCATATTATTATT
GTTTTCAAATATTTTTTAGGAATGTTGATTGGATTCTGTATTTTTGTTTA
GTAAGAAGTAAAGAGGCAGTTAGCATGATGGAAATTCAGTTAATTTATTA
TAAGTCAGTGCACAAGAATTGATCAGAAAATTGCATTTTCCCATTTCAAT
CCAGTGAGAGGCTAGAAACAATAATACTTTCTTAATTTANAAACAAAATG
CTTATTTCTAAATTGTTAAATTTTAGAAAAAAATATTGGTACTACTACAT
GATATTTCTCTCTCTCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_p12.g1 MSMg01no319_p12.g1 CHROMAT_FILE:
MSMg01no319_p12.g1 PHD_FILE: MSMg01no319_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:23 2005
         (342 letters)



>mm_chr12_38119586_38120326
          Length = 741

 Score =  642 bits (332), Expect = 0.0
 Identities = 338/340 (99%), Gaps = 1/340 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgtgttacctggcaatttgtaaataatttcttgagaatcttcatatcgtacctatattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ctgtgttacctggcaatttgtaaataatttcttgagaatcttcatatcgtacctatattc 480

                                                                       
Query: 61  acaatcaatgtcttaaacaaataaaacattggccagcttcctgtttcatctaatgatttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 acaatcaatgtcttaaacaaataaaacattggccagcttcctgtttcatctaatgatttg 420

                                                                       
Query: 121 tctggaatgattttactgtggtgaaataaaattcatgtaataaatccactaatcaaatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tctggaatgattttactgtggtgaaataaaattcatgtaataaatccactaatcaaatat 360

                                                                       
Query: 181 gtatcattaaatgatcgtatgtttcccatttcctgactgtattccataacccgaaaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 359 gtatcattaaatgatcgtatgtttcccatttcctgactgtattccataacctgaaaaaca 300

                                                                       
Query: 241 tcacttttttttttcccaattcaaactgaatagtcatttggagcaggaactgttaaaaca 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 tcacttttttttt-cccaattcaaactgaatagtcatttggagcaggaactgttaaaaca 241

                                                   
Query: 301 acagcaacaattgtcattaattttcatattttaaattatg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 acagcaacaattgtcattaattttcatattttaaattatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 741
Length adjustment: 9
Effective length of query: 333
Effective length of database: 732
Effective search space:   243756
Effective search space used:   243756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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